XLOC_001258 (cxxc4)


Basic Information

Item Value
gene id XLOC_001258
gene name cxxc4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26250729 ~ 26294995 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002043
TGCGTCGCAGCTTTTAAATACACTTAGTCCTGTAATTAGTTATAAGCTACTTACATGTAATCTCCGAGACTATAATGTAAAGAGTTAGCAAACAGACAGCGACAGAAAGCACGCTGTTTCCCGGTGGAGATTGATGATCATCCCCCTCCCCAGAGCTCCTGGTGTTTCTATAGTAATTTCCAGCCAATGATCAGTTGGTGTCCACACATCCCCATCCTCCTCACCTCAGCACCAATCAGCCACACACAGCGACAGGAGACACCTCACCTCCAGTCATCGCTCCACGGACAACAGGCTCAACCCGGACGCCATCGCAAACAAATACCTTTCCGTCTACTTTTCTTCACGTGTAGAATGGCGTTTTGTGCGTAAAGATGGTGTTTTTGTGGTGATCCCTCGGCGTGTGTTTATTGTGCATTCATCGCAGTAATGTGCTGCCCTGGTGTCTGGATTGTCTGTGGAGAGGATAAACCCAGGATGGTAATGTGTTGTGTCTAACAAGCTTCACCTTCAAAAGAACAACTGGCACCCTTCACCAAAAAAAATTTGTGAGTGCTTGAAACTTAACAGTCATGTCTAATCTCAACAATGCACTTTGCATTGAAAGCGGCCAGAGCACCGACGTGTCACTCTTGCAAAAGGATAATCTTCAGGATGGTGGATTAAGCCAGCTGTTGGATTACAATGCAGAAATGGAAAGATACAGGTCATTTGCAAACTTTTACAAAACCAATGGAGCATTTCCACAGACTGCTAAGATTGCCCGCATAACGACACCAATTTTTCCCAGCGCCAGAATTGGCGTGTCCCCTTGGAACTGTGATAACGGCATGCTCTGGGGAAGGAAATCAGCAGCAATAAACCCTAATAGGACCAGCATGCATAGAAACGACTCCCAAAGGCCGGGGAAACCTGGCGTGCCGCCAGAGACGCTGCAAATGGCAAATAATAATTTCCTCTCTAGCTTATCCCCTGAACACTGCAGACCTTTAGCAGGAGAATGCATGAACAAGCTGAAATGCGGTGCTGCTGAAGCAGAGATAATGAATCTCCCGGAACGTGTTGGAACTTTTTCCGCTATTCCGGCTTTAGGGGGCATCTCATTACCTCCCGGGGTCATCGTCATGACAGCCCTTCACTCCCCCGCAGCCTCAGCAGCCGTTACAGACAGTGCGTTTCAAATTGCCAATCTGGCAGACTGCCCACAGAATAATTCCTCCGCATCCAGCGGAAACCCAgcgaaaaagaaaaggaaaaggtgTGGGGTCTGTGCGCCCTGCAGGAGGCTAATCAACTGTGGAGTGTGCAGCAGTTGTCGGAACCGTAAGACGGGCCACCAGATCTGCAAGTTTCGGAAATGCGAGGAGCTAAAAAAGAAGCCTGGCTCATCACTAGAGAGAACACCAGTAAACAGCGGAGAAGCATTTCGATGGTTCTTTTAGGACTCTCAAATACGTGACATCATATGGACTGATGTAACAGACTTACCACAAAAGGAAATTGCAGGGctacaaacccaaaacaaaacccAGACTGTGGATGACAGAGCATGAGAGGGTTTGACAAGTTAaacaaaggaagaaaaaaaactttgtaaTTTTATTTCCTGTGTAATTATTATTGTACCTTTTGGCAGCATCAATGTATATTTTTCAGTGTCTATCAATGTGTTTCAGTGTCTTGGCTGTGCAAGTTGCAAGCATTGTTGTAAAGAACTGAGTAGACAATCATTACAAACAGAGGAAAATAATGTCAGCCAGTGGGCTAATGGCCATTTGGAtcacaaacatatttttaaatctgGAGCAATAATTATAAAGGTAATTGTTCACCTCCTAATTGCCACCACTTTACACTTTTCTAAGGAATGATCTTAAAAATACCTCTTTTCACCTAAACCGACAAGTTCGAGACacacattagctatgttttcatctaTTATCTATTATACTATCACCAAAAAAGCATTACATTTTGAAAATTTGGTCAAAACTTATACCCATAACTAAGATAACTTTTTATCTGGTTAgaaaaaacatgcacataaacTATGACGGAAACAAATATACAGAATAAATTCCACTGTGCGcaatcatgtgattttgtttcagCATcagtaatgttgttttggtcaagtCTTCACAGTAGTTAAGTTTCATTACTTCCCAGAACTGTCTCATGCCTCAAAAAGCCACTGTGCGTTTATTACATTTCATTGTCTTCTAAGATGCAAGTATTTTAGTATATAAGTATGAAACAGCCCACAGTGACCTCCTACAGCAGCAAATTTCAGGCAAATGTTTGCCAGTTTATGAAATTTTCATTCTCTTTGACTCACtggatggaaacagtgctttattcgcaaatttttaatgcgatattccagttttgcgcataaactTAAATCTCATCaatttgaatggaaacatagctactgtgaTTAATCTCTCATTAATGTGATGTTTTGTATTTGACAGACTTTGTATGAACAGTAAGCAAAAGCCaggaattttctttcttttcagctGTGTTAATTTTTTGTGTGGCACATTATCTTGTTGCCATGGTGCACTTTTAAAGGTCCGGTAATGCTGAGAGACGGTGGTCTAAGGTTGTTTGTATAGTCTCTCAAAGTTCGATCACATTCCACTTAGTTTTGGTTGAAATTCTTTCAAAAGACTACCTAAAGGTAGGTAGCGAGCCAGTACAAAACATTTATGGAAATCAAAGTAAGATTTGTGACATGATATTTTAAGTCTCACAACACAGTAAACAACACATTCCGATATGAATTATCCAATAAGTTGCTCATTGTCTTTACCCTAATGTTGCATGTgtaagtgtgtttttgttttaaagataaCAAAAAATTTGTATATTGTTGTTGTGATGCTtttatgtgttaaaataataaaggaaaggaaaaaaaaaaggaaaaacggtgaaaaaaaattatttgatgcTATAATTTGAACAATTTTTACATCTGTATAGTGTTTCTATCTTTTATCCTAATATAAGCATACATTTCCTCTGTTTCTATGTGGCTGTCACAGGGGATAAAAAAGTGGGAAGAAAATACaggaaaaaaacagacattgtCATCCCATCTTTCCAGAGAATGCAGAAATGTCACATGGAAAAGAGAATGACTCCCAGAGGCGTTAAGCCTTAAAGAGACACTGAAATCCCTTGCGGTTTGTAATGCGTGGAACGGGTGGGTTTTGGGGGGCAGGCGGTGGTTTGGGGGAATCAAGGATATCGCAAGGATAGAATAATTTTGGTGTGGAACATGGAACAAAGGAGCTTCTTTCAGGAAAACAGAAGGAATATGCTTTCTGGAAAATATAATGATATTGATGGCTCGACTCATGGTTCCAAACTAGCCATCCTTTACAACTTatgcagcaaatgttttacgcagcggacgcccttccagctgaacCCGTCACTGGGAACATTCATACACTtccatccacacagaaatgccaaccaacccagctggggctcgaaccagcgaccttcttgctgtgaggctgccTGTAACTGTTATTTGcaatcaaattacatttttttttttacattttactgtttcattattattattattattattattatttgtgtaatATTACCTGTTAATTAAATATACTAGGTACAACAAGTCACTGTTAAatatacaatgcatccggaaagtatttattgTCAAGTATTCActtcacttttccacatttttttttcatgttacagccttattcctaaatggattatATAATgacaacatgatttttttttttattgctgaaaatttattacaaataaaaaacctgaaaaataacaaaaaaaaaaaaaacacaagtattcacagcctttgttgtgaagctctaaattgagctcaggcacat
>TCONS_00002044
AGGCTCAACCCGGACGCCATCGCAAACAAATACCTTTCCGTCTACTTTTCTTCACGTGTAGAATGGCGTTTTGTGCGTAAAGATGGTGTTTTTGTGGTGATCCCTCGGCGTGTGTTTATTGTGCATTCATCGCAGTAATGTGCTGCCCTGGTGTCTGGATTGTCTGAGAACACCAGTAAACAGCGGAGAAGCATTTCGATGGTTCTTTTAGGACTCTCAAATACGTGACATCATATGGACTGATGTAACAGACTTACCACAAAAGGAAATTGCAGGGctacaaacccaaaacaaaacccAGACTGTGGATGACAGAGCATGAGAGGGTTTGACAAGTTAaacaaaggaagaaaaaaaactttgtaaTTTTATTTCCTGTGTAATTATTATTGTACCTTTTGGCAGCATCAATGTATATTTTTCAGTGTCTATCAATGTGTTTCAGTGTCTTGGCTGTGCAAGTTGCAAGCATTGTTGTAAAGAACTGAGTAGACA
>TCONS_00002045
ATGCATAGAAACGACTCCCAAAGGCCGGGGAAACCTGGCGTGCCGCCAGAGACGCTGCAAATGGCAAATAATAATTTCCTCTCTAGCTTATCCCCTGAACACTGCAGACCTTTAGCAGGAGAATGCATGAACAAGCTGAAATGCGGTGCTGCTGAAGCAGAGATAATGAATCTCCCGGAACGTGTTGGAACTTTTTCCGCTATTCCGGCTTTAGGGGGCATCTCATTACCTCCCGGGGTCATCGTCATGACAGCCCTTCACTCCCCCGCAGCCTCAGCAGCCGTTACAGACAGTGCGTTTCAAATTGCCAATCTGGCAGACTGCCCACAGAATAATTCCTCCGCATCCAGCGGAAACCCAgcgaaaaagaaaaggaaaaggtgTGGGGTCTGTGCGCCCTGCAGGAGGCTAATCAACTGTGGAGTGTGCAGCAGTTGTCGGAACCGTAAGACGGGCCACCAGATCTGCAAGTTTCGGAAATGCGAGGAGCTAAAAAAGAAGCCTGGCTCATCACTAGAGAGAACACCAGTAAACAGCGGAGAAGCATTTCGATGGTTCTTTTAG
>TCONS_00002046
ATGCATAGAAACGACTCCCAAAGGCCGGGGAAACCTGGCGTGCCGCCAGAGACGCTGCAAATGGCAAATAATAATTTCCTCTCTAGCTTATCCCCTGAACACTGCAGACCTTTAGCAGGAGAATGCATGAACAAGCTGAAATGCGGTGCTGCTGAAGCAGAGATAATGAATCTCCCGGAACGTGTTGGAACTTTTTCCGCTATTCCGGCTTTAGGGGGCATCTCATTACCTCCCGGGGTCATCGTCATGACAGCCCTTCACTCCCCCGCAGCCTCAGCAGCCGTTACAGACAGTGCGTTTCAAATTGCCAATCTGGCAGACTGCCCACAGAATAATTCCTCCGCATCCAGCGGAAACCCAgcgaaaaagaaaaggaaaaggtgTGGGGTCTGTGCGCCCTGCAGGAGGCTAATCAACTGTGGAGTGTGCAGCAGTTGTCGGAACCGTAAGACGGGCCACCAGATCTGCAAGTTTCGGAAATGCGAGGAGCTAAAAAAGAAACGACGGCTCAGACACCACACTCCCCCCCCCTCCCTCCTTCCCTCCGTATGGTTTATGtaa
>TCONS_00002047
ATGTCTAATCTCAACAATGCACTTTGCATTGAAAGCGGCCAGAGCACCGACGTGTCACTCTTGCAAAAGGATAATCTTCAGGATGGTGGATTAAGCCAGCTGTTGGATTACAATGCAGAAATGGAAAGATACAGGTCATTTGCAAACTTTTACAAAACCAATGGAGCATTTCCACAGACTGCTAAGATTGCCCGCATAACGACACCAATTTTTCCCAGCGCCAGAATTGGCGTGTCCCCTTGGAACTGTGATAACGGCATGCTCTGGGGAAGGAAATCAGCAGCAATAAACCCTAATAGGACCAGCATGCATAGAAACGACTCCCAAAGGCCGGGGAAACCTGGCGTGCCGCCAGAGACGCTGCAAATGGCAAATAATAATTTCCTCTCTAGCTTATCCCCTGAACACTGCAGACCTTTAGCAGGAGAATGCATGAACAAGCTGAAATGCGGTGCTGCTGAAGCAGAGATAATGAATCTCCCGGAACGTGTTGGAACTTTTTCCGCTATTCCGGCTTTAGGGGGCATCTCATTACCTCCCGGGGTCATCGTCATGACAGCCCTTCACTCCCCCGCAGCCTCAGCAGCCGTTACAGACAGTGCGTTTCAAATTGCCAATCTGGCAGACTGCCCACAGAATAATTCCTCCGCATCCAGCGGAAACCCAgcgaaaaagaaaaggaaaaggtgTGGGGTCTGTGCGCCCTGCAGGAGGCTAATCAACTGTGGAGTGTGCAGCAGTTGTCGGAACCGTAAGACGGGCCACCAGATCTGCAAGTTTCGGAAATGCGAGGAGCTAAAAAAGAAGCCTGGCTCATCACTAGAGGTGAGACGACGATGGTTTATGtaa

Function

symbol description
cxxc4 Predicted to enable methyl-CpG binding activity. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human CXXC4 (CXXC finger protein 4).

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-179 Predicted to enable methyl-CpG binding activity. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human CXXC4 (CXXC finger protein 4).

Ensembl:

ensembl_id ENSDARG00000077817

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002043 False 3905 mRNA 0.40 3 26250729 26294995
TCONS_00002044 False 495 processed_transcript 0.41 2 26252908 26294703
TCONS_00002045 False 564 mRNA 0.51 2 26253192 26292897
TCONS_00002046 False 561 mRNA 0.53 3 26289358 26292897
TCONS_00002047 True 849 mRNA 0.49 2 26289358 26293203

Neighbor

gene id symbol gene type direction distance location
XLOC_001257 NA coding downstream 2442 26243505 ~ 26248287 (-)
XLOC_001256 NA coding downstream 65009 26183399 ~ 26185720 (-)
XLOC_001255 cdkn2a/b coding downstream 119641 26127818 ~ 26131088 (-)
XLOC_001254 pdcd4a coding downstream 179194 26046148 ~ 26071535 (-)
XLOC_001253 gpank1 coding downstream 205145 26036123 ~ 26045584 (-)
XLOC_001259 CU570873.1 coding upstream 55531 26350526 ~ 26350641 (-)
XLOC_001260 ppa2 coding upstream 94158 26389153 ~ 26398361 (-)
XLOC_001261 ints12 coding upstream 143602 26438597 ~ 26444075 (-)
XLOC_001262 si:ch211-202n12.2 coding upstream 243451 26538446 ~ 26544268 (-)
XLOC_001263 NA coding upstream 259885 26554880 ~ 26595059 (-)
XLOC_001247 CU929073.1 non-coding downstream 387090 25862966 ~ 25863639 (-)
XLOC_001245 NA non-coding downstream 536235 25709312 ~ 25714494 (-)
XLOC_001242 AL935184.2 non-coding downstream 692442 25555725 ~ 25558287 (-)
XLOC_001264 NA non-coding upstream 278434 26573429 ~ 26575260 (-)
XLOC_001266 NA non-coding upstream 370763 26665758 ~ 26669757 (-)
XLOC_001271 NA non-coding upstream 723671 27018666 ~ 27024844 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017909 cxxc4,LOC103148507,LOC106610359 coding CM030131.1 CM030131.1 28568960 ~ 28569655 (-)