RNA id: TCONS_00003420


Basic Information

Item Value
RNA id TCONS_00003420
length 624
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id XLOC_001256
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26183399 ~ 26185720 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATTGTCCAATCCCACGCAGCCATAGAAAGGTAAGCTTATTGAGCGCGAGCAACAAGTTCATATTTGCCGATAACAGGAGGCAGATCGTTTCCGAGGTTTCcgaaatttttattgttttatttcccaGACTCAAATCTTGTAAAGGTAGACAACACCGATATAATTACACAAAAACATTGACGACAAGGAAAACCTGGTCAGATCGCGCGAACAACTGGACTGTGAAGAGGATTACGTTAGTCAAAGCAGGCACGGGGAACAAAATAACTGGCAGCGAAAATACTTCTTGGTGATGTGTACAAAGATTTAATTGTGAAAAAGGGATGATTTCAAGAAGAGAGAAGACATACGGATGACCAGTAAAggaacaaagcaaaaaaataaataaaaaatggctgTTAAGGTTGCAAGTACTTCTCAAAGTTCAGCTATGTTTGCAATGGGGAAACAACTTAAAAGAGACCTCAAGAAGcgatacaaagaaaaaaaaaaaaaagctcctgtAATCTGAGATTGACTTGTTTCAAAACACAGAGTTGAGAAGATCAAGGAAAATAACCGTGGCATTGGATAGTGACAACAAGAAAATGATGGAGACAAGGTATTGGAGAACAGccttttgc

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0006364 rRNA processing biological_process
GO:0007399 nervous system development biological_process
GO:0007417 central nervous system development biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002019 lncRNA downstream 319760 25862966 ~ 25863639 (-) True XLOC_001247
TCONS_00003418 lncRNA downstream 468905 25709312 ~ 25714494 (-) False XLOC_001245
TCONS_00002014 lncRNA downstream 507300 25672442 ~ 25676099 (-) False XLOC_001244
TCONS_00003417 lncRNA downstream 625112 25555725 ~ 25558287 (-) True XLOC_001242
TCONS_00002008 lncRNA downstream 696980 25478767 ~ 25486419 (-) True XLOC_001240
TCONS_00002953 lncRNA upstream 57785 26243505 ~ 26248287 (-) True XLOC_001257
TCONS_00002053 lncRNA upstream 209396 26395116 ~ 26398289 (-) True XLOC_001260
TCONS_00002954 lncRNA upstream 369160 26554880 ~ 26595059 (-) True XLOC_001263
TCONS_00002955 lncRNA upstream 387709 26573429 ~ 26574741 (-) False XLOC_001264
TCONS_00002058 lncRNA upstream 387715 26573435 ~ 26575260 (-) True XLOC_001264
TCONS_00002040 mRNA downstream 52311 26127818 ~ 26131088 (-) False XLOC_001255
TCONS_00002041 mRNA downstream 52311 26129053 ~ 26131088 (-) True XLOC_001255
TCONS_00002038 mRNA downstream 111864 26047355 ~ 26071535 (-) False XLOC_001254
TCONS_00002037 mRNA downstream 120211 26046148 ~ 26063188 (-) False XLOC_001254
TCONS_00002036 mRNA downstream 120601 26046148 ~ 26062798 (-) False XLOC_001254
TCONS_00002043 mRNA upstream 65009 26250729 ~ 26294995 (-) False XLOC_001258
TCONS_00002045 mRNA upstream 67472 26253192 ~ 26292897 (-) False XLOC_001258
TCONS_00002046 mRNA upstream 103638 26289358 ~ 26292897 (-) False XLOC_001258
TCONS_00002047 mRNA upstream 103638 26289358 ~ 26293203 (-) True XLOC_001258
TCONS_00002050 mRNA upstream 204604 26390324 ~ 26398361 (-) False XLOC_001260
TCONS_00002039 other downstream 120240 26051481 ~ 26063159 (-) True XLOC_001254
TCONS_00002024 other downstream 246758 25918274 ~ 25936641 (-) True XLOC_001249
TCONS_00002016 other downstream 471596 25709813 ~ 25711803 (-) True XLOC_001245
TCONS_00002015 other downstream 507059 25675697 ~ 25676340 (-) True XLOC_001244
TCONS_00002010 other downstream 625469 25555725 ~ 25557930 (-) False XLOC_001242
TCONS_00002044 other upstream 67188 26252908 ~ 26294703 (-) False XLOC_001258
TCONS_00002048 other upstream 164806 26350526 ~ 26350641 (-) True XLOC_001259
TCONS_00002049 other upstream 203433 26389153 ~ 26394460 (-) False XLOC_001260
TCONS_00002051 other upstream 206035 26391755 ~ 26398274 (-) False XLOC_001260
TCONS_00002052 other upstream 208645 26394365 ~ 26398303 (-) False XLOC_001260

Expression Profile

//