RNA id: TCONS_00002954


Basic Information

Item Value
RNA id TCONS_00002954
length 416
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_001263
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26554880 ~ 26595059 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAAGGGCCAGATCAAGTGGTCATTGATACCTCAGGGTAGACGGCTGATAACAGCAACAGCATCTGGCCTACAACAGCATCTGTCAGATTTTTAATCTGACCTGACTGTCATGTCATGGACTATTATTTCCAGTTTGGATTTTGTCTTGATGTTGCTGGACAATGAAGAACAGACAGGAACTGGACAGCTCGTGATGGCAGTAACTGAGCAGAACAGCTGCTTCTACAAGCGACAGCCCAAATCTTACCAAGATCATCATGAGACTGTTCTTCAGGTATTTAGGAACTTCTCTTGGAGTCGTATTCATGAAAGCTGTCAAACACAGTCCAGTTACTCAAGTCTAAACTGTTGCTTTAAACTGAGATTGTCAAAGTTTGAACAGTCTCAAAGGGTGGTCTGCAATCTTGACCAGGGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002053 lncRNA downstream 156591 26395116 ~ 26398289 (-) True XLOC_001260
TCONS_00002953 lncRNA downstream 306593 26243505 ~ 26248287 (-) True XLOC_001257
TCONS_00003420 lncRNA downstream 369160 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00003419 lncRNA downstream 369160 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00002019 lncRNA downstream 691241 25862966 ~ 25863639 (-) True XLOC_001247
TCONS_00002061 lncRNA upstream 67418 26662477 ~ 26663423 (-) True XLOC_001265
TCONS_00003421 lncRNA upstream 70699 26665758 ~ 26669757 (-) True XLOC_001266
TCONS_00002073 lncRNA upstream 399052 26994111 ~ 27000838 (-) False XLOC_001270
TCONS_00003422 lncRNA upstream 423607 27018666 ~ 27024844 (-) False XLOC_001271
TCONS_00003423 lncRNA upstream 427596 27022655 ~ 27024844 (-) True XLOC_001271
TCONS_00002056 mRNA downstream 10612 26538446 ~ 26544268 (-) False XLOC_001262
TCONS_00002055 mRNA downstream 110805 26438598 ~ 26444075 (-) True XLOC_001261
TCONS_00002050 mRNA downstream 156519 26390324 ~ 26398361 (-) False XLOC_001260
TCONS_00002043 mRNA downstream 259885 26250729 ~ 26294995 (-) False XLOC_001258
TCONS_00002047 mRNA downstream 261677 26289358 ~ 26293203 (-) True XLOC_001258
TCONS_00002059 mRNA upstream 65310 26660369 ~ 26664840 (-) False XLOC_001265
TCONS_00002062 mRNA upstream 75769 26670828 ~ 26676391 (-) False XLOC_001267
TCONS_00002063 mRNA upstream 75788 26670847 ~ 26675969 (-) True XLOC_001267
TCONS_00002064 mRNA upstream 106551 26701610 ~ 26702992 (-) False XLOC_001268
TCONS_00002065 mRNA upstream 106807 26701866 ~ 26702930 (-) True XLOC_001268
TCONS_00002057 other downstream 15256 26538961 ~ 26539624 (-) True XLOC_001262
TCONS_00002054 other downstream 115530 26438597 ~ 26439350 (-) False XLOC_001261
TCONS_00002052 other downstream 156577 26394365 ~ 26398303 (-) False XLOC_001260
TCONS_00002051 other downstream 156606 26391755 ~ 26398274 (-) False XLOC_001260
TCONS_00002049 other downstream 160420 26389153 ~ 26394460 (-) False XLOC_001260
TCONS_00002060 other upstream 66374 26661433 ~ 26664653 (-) False XLOC_001265
TCONS_00002067 other upstream 146685 26741744 ~ 26782518 (-) True XLOC_001269
TCONS_00002079 other upstream 1493089 28088148 ~ 28089546 (-) True XLOC_001275
TCONS_00002080 other upstream 1713557 28308616 ~ 28309012 (-) True XLOC_001276
TCONS_00002081 other upstream 1753899 28348958 ~ 28364598 (-) True XLOC_001277

Expression Profile

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