XLOC_001275 (snapc3)


Basic Information

Item Value
gene id XLOC_001275
gene name snapc3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 28067771 ~ 28089650 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002077
CTAGCACAGTAGATGGCGATGTGCACAAAAAATGCAATTCGCCATAAACGTAAGAAGAAGACGAAGAATTATGGCGGAGATACGCAAAGAGATGCCATGTGAAAACGTACCTGTTTATGAATTCGTGGACGTAAACTCTAAGGAGTTTCATATCGGCACATTTCGAAAATTATGGGTAGATGTGCTAAATCCGGAGATGTATTCATACAGTGGCACAGCCCCAGAGATAGAGGATGTGGAATTAATCGAGGAGATGGGCATTGAGCCAGCGATACTGGAGGAACTCAAAAACATCTGCAGTGTTGATTCCCTGAGAAGTAAACATGAAGACCAGGACATTATACCATCAGAGTCTCATCTATCCACACTGAAATTACGCAAAAGAAGACAAGACTATAAAGAAACTCTGACCAGAGATATGGTTGACAGACATGAAGTCTATGCTAATGAAATGgaGATGTTATCTGTCGGCAAGAGGCCTGACAATGTCAGAGACCTGATCCCTGAGGGAGAAGTCATATTGACTTTTAATATTATGTATCCTATTCTTTTTCAGCGGtttAGGCTTGTGAGAGCATTTCAGACTCTGCATGTGTTGGGCTCTCAGAAGCTGACTGATCTTCGGGATGTCATCTGCTGTGTCAGCGATCTGCAGGTGTTTGGAGAGTTCAGCAACACTCCAGACATGGTACCACAGTTCATCAGCAAGGATCATTACAAgtctgcattttttttcttcaatggaACATTCTACAATGACACAAGGTTCCCAGAATGTCAAGACATCAGCAAGGTAATAAAAGAGTGGACACGAAGCAGAGACTTCCCAGATTTCAAGACTGCAAGGATGGAAGACACATCTTTCAATGACCTGCAGATGAAAGTCGGGTTTCCATACTTATACACTCACCAGGGTGATTGTGAGCATGTTGTTGTCCTTACTGACGTCAGATTGGTCCATCAGGATGACTGTTTGGACATAAAGCTCTACCCACTCATCACTCACAAGCATAGAGTCATGACTCGGAAGTGTTCTGTGTGTCATCTCTATATCAGCAGATGGATAACAACCAATGATGCTCTTGCCCCAATGGACCCCTGCCTGTTTTGTGACCAGTGTTTTCGAATGTTTCACTATGACGATAAAGGCAACAAAGTAGGAGATTTCCTGGCCTATGCCTATGTCGATCCAGGCACATTTAATTGATCCTTAACCTAAAAAACTGTTCACTATGCAgtatttaaaacagaaatgtttttctttaagttatatttttgcCCAATATGTTGCTTATAAATACAATGTGACATCTACATATATTCATcgctgttttctaaaaaaaactactgattaaatctgatttaaaaaCTGTATATTGCGCATgactgggagaaaaaaataaaaagctgttgTAAACG
>TCONS_00002078
GCCATGTGAAAACGTACCTGTTTATGAATTCGTGGACGTAAACTCTAAGGAGTTTCATATCGGCACATTTCGAAAATTATGGGTAGATGTGCTAAATCCGGAGATGTATTCATACAGTGGCACAGCCCCAGAGATAGAGGATGTGGAATTAATCGAGGAGATGGGCATTGAGCCAGCGATACTGGAGGAACTCAAAAACATCTGCAGTGTTGATTCCCTGAGAAGTAAACATGAAGACCAGGACATTATACCATCAGAGTCTCATCTATCCACACTGAAATTACGCAAAAGAAGACAAGACTATAAAGAAACTCTGACCAGAGATATGGTTGACAGACATGAAGTCTATGCTAATGAAATGgaGATGTTATCTGTCGGCAAGAGGCCTGACAATGTCAGAGACCTGATCCCTGAGGGAGAAGTCATATTGACTTTTAATATTATGTATCCTATTCTTTTTCAGCGGAAGCTGACTGATCTTCGGGATGTCATCTGCTGTGTCAGCGATCTGCAGGTGTTTGGAGAGTTCAGCAACACTCCAGACATGGTACCACAGTTCATCAGCAAGGATCATTACAAgtctgcattttttttcttcaatggaACATTCTACAATGACACAAGGTTCCCAGAATGTCAAGACATCAGCAA
>TCONS_00002079
ACGTACCTGTTTATGAATTCGTGGACGTAAACTCTAAGGAGTTTCATATCGGCACATTTCGAAAATTATGGGTAGATGTGCTAAATCCGGAGATGTATTCATACAGTGGCACAGCCCCAGAGATAGAGGATGTGGAATTAATCGAGGAGATGGGCATTGAGCCAGCGATACTGGAGGAACTCAAAAACATCTGCAGTGTTGATTCCCTGAGAAGTAAACATGAAGACCAGGACATTATACCATCAGAGTCTCATCTATCCACACTGAAATTACGCAAAAGAAGACAAGACTATAAAGAAACTCTGACCAGAGATATGGTTGACAGACATGAAGTCTATGCTAATGAAATGgaGATGTTATCTGTCGGCAAGAGGCCTGACAATGTCAGAGACCTGATCCCTGAGGGAGAAGTCATATTGACTTTTAATATTATtcagatatatgaaatGGAGCCTGCACAAAGAATGTgtcaaacaaaactcaagtacaggcacagaacaacatgagcatttatagcaaatgaataaatgtaaacattatccgctt

Function

symbol description
snapc3 Predicted to enable RNA polymerase III type 3 promoter sequence-specific DNA binding activity and bent DNA binding activity. Predicted to contribute to RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and core promoter sequence-specific DNA binding activity. Acts upstream of or within RNA splicing; T cell differentiation; and mRNA processing. Predicted to be located in nucleus. Predicted to be part of snRNA-activating protein complex. Orthologous to human SNAPC3 (small nuclear RNA activating complex polypeptide 3).

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0042795 snRNA transcription by RNA polymerase II biological_process
GO:0042796 snRNA transcription by RNA polymerase III biological_process
GO:0030217 T cell differentiation biological_process
GO:0008380 RNA splicing biological_process
GO:0019185 snRNA-activating protein complex cellular_component
GO:0003681 bent DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0001006 RNA polymerase III type 3 promoter sequence-specific DNA binding molecular_function
GO:0001046 core promoter sequence-specific DNA binding molecular_function

KEGG:

id description
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-040426-971 Predicted to enable RNA polymerase III type 3 promoter sequence-specific DNA binding activity and bent DNA binding activity. Predicted to contribute to RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and core promoter sequence-specific DNA binding activity. Acts upstream of or within RNA splicing; T cell differentiation; and mRNA processing. Predicted to be located in nucleus. Predicted to be part of snRNA-activating protein complex. Orthologous to human SNAPC3 (small nuclear RNA activating complex polypeptide 3).

Ensembl:

ensembl_id ENSDARG00000101474

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002077 False 1419 mRNA 0.41 9 28067771 28089650
TCONS_00002078 False 651 mRNA 0.42 6 28080331 28089557
TCONS_00002079 True 546 processed_transcript 0.40 5 28088148 28089546

Neighbor

gene id symbol gene type direction distance location
XLOC_001274 NA coding downstream 317213 27744798 ~ 27750558 (-)
XLOC_001273 si:dkey-29d5.2 coding downstream 323786 27738647 ~ 27743985 (-)
XLOC_001272 si:ch211-127n13.2 coding downstream 525652 27530825 ~ 27542119 (-)
XLOC_001271 NA coding downstream 1042927 27018666 ~ 27024844 (-)
XLOC_001270 cntln coding downstream 1052836 26821963 ~ 27014935 (-)
XLOC_001276 NA coding upstream 218813 28308463 ~ 28316501 (-)
XLOC_001277 BX571828.1 coding upstream 259308 28348958 ~ 28364598 (-)
XLOC_001278 si:ch1073-440b2.1 coding upstream 301981 28391631 ~ 28473487 (-)
XLOC_001279 FO907124.1 coding upstream 505159 28594809 ~ 28607353 (-)
XLOC_001280 ednrba coding upstream 534536 28624186 ~ 28629471 (-)
XLOC_001266 NA non-coding downstream 1398014 26665758 ~ 26669757 (-)
XLOC_001263 NA non-coding downstream 1472712 26554880 ~ 26595059 (-)
XLOC_001264 NA non-coding downstream 1492511 26573429 ~ 26575260 (-)
XLOC_001281 NA non-coding upstream 618529 28708179 ~ 28709951 (-)
XLOC_001289 BX908780.3 non-coding upstream 1077671 29167321 ~ 29168495 (-)
XLOC_001290 NA non-coding upstream 1084852 29174502 ~ 29185227 (-)

Expression


Co-expression Network