XLOC_001278 (si:ch1073-440b2.1)


Basic Information

Item Value
gene id XLOC_001278
gene name si:ch1073-440b2.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 28391631 ~ 28473487 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002082
TTTTAGCTACATTTTTTTAGCTTAaaccttaaaatgacttaaagTTCTGTTACATTTGATTTCTGATAGTAACACATCTTTATTTCTTCACAGAGCCCTCTATAGGTAGGCTCCTGGCTCAGCGGGCAGAGTTGTGTATGGAAATGAAGAATTTCAGTCAAGCAATCAAGGATGGGGACACCATGTGCCAACTCCGTCCACTGTGGCCAAGGGCTCACTATATTAAGGCTACAGCACTCAGGAGTGCTGGTAGCAGTGAAGAGGCTCTGCAGGAGTATTTATTCTGTGCGGCTTTGAAACCTGACTGGATTGCTGTAAAACTGGAGGCTCAGAAGaTTCTGAGCCACATGTTCTCTTCAGTCTTTGTAAATGATGGTCTGGCTACGTCCCTTCCAGCCTGCACCTCTCGTATTAAACCCACATCTCTCCTCAGTTCTCTTAATACCATTATTCCTAGAGATGGAACCAAAGCAGGCTGTTCGAAGgatCTGACTCTCAGTTGCAGTAAAATCAAAGATGGGAACTCTCAATTATCtgaaaatgtgaattgtgttggcCTCTCTTCACTATTTATTCCACCAGTTCTAAAAAGGAAATGGACTGAAAATTCTAAACAATCTGAGCCTCCAAGTAAACAGCTCAAAGAAGATCATGTGTTTTCATCTGCGGTGGTGAAACGGCAAGTTCCTTTGCAGCTTTTGGACAATGCTGACTTTGAATGTTCTCTTTGTATGAGACTGTTTTATGAGCCTGTCACCACACCCTGTGGACACACTTTTTGCCTCAAGTGTTTAGAACGTTGCTTGGACCACAATCCTAACTGTCCCCTCTGTAAGGAGAACCTCTCAGAGtaTCTGGCCACTAGAGCGTACTGCAAAACTCTTCTAATTGAAGAACTATTGCAGCAGTACTTGAGTGATGAACTAACAGAAAGGCGAAAAGTTTATGAAGAAGAGATGAAAGAACTGTCAAActtaaaccaggaagTTCCCATCTTTGTTTGCACCATGGCATTTCCTACCATTCCCTGTCCACTGCATGTGTTTGAGCCTCGATACAGGCTTATGATTCGCAGATCATTGGAAACAGGGACCAAACAGTTTGGCATGTGTATTGCTGATGAACTGAAAGGGTTTGCAGACCACGGCTGTATGCTGGCAGTGAGAGATGTCAAGTTTTTTCCAGATGGGCGCTCAGTAGTGGACACCATAGGCATTGCTCGTTTTAAAGTTCTCAGTCATGGGCAGAGAGATGGATACCACACAGCCAAGATTGAATATTTGGAGGATAAAAAGGCTGAAGGAGAGGACTTGACTGAGCTCCTGAAGTTGCATGACTCTGTGTATGATCAGGCTATGGCCTGGTTCACTTCCCTTAAAGATGACATGAAGAATCAAATCATCAGCCATTTTGGACCACTACCTGTCAAAGACCCTGACCCACAGGGAAAACCCAATGGTCCTGCATGGTGTTGGTGGCTGTTGGCTGTGTTACCACTGGAAAACAAAGCCCAGCTTACAATTCTTGCGATGAACACTCTTAAAGGCAGACTGATTGCAATTCGCAGAGTCCTCATTTTTGTAACTCGCAAGCGGCCTCGATGAAAACTAGGGCTTGGCCTAAATGTCATCAAATTGAACTTATGTTTAAGTTAATGCTGCGTCTAGCTGGAGTCATGGAAGTATCTTAATTCAACCATCTTGGTCAGGCATTGCAGCACAAACCCTCAtcaattagtaataaaaaaaagatacatttacGCTCATCAATGAACAGCGGTGAGGATTATAGTGTAGTCATGCAAAGTCAAGAAAGAATTTGTCACTGATGGTTTACATTGGAATGCTCTCATTTAGTTCAGTAGCAGTAAAAGAGTTTTACAGTTGcaacaaacataaaaacagtgggACCCATTTTCCATTTTCTGTCCCTTAAGCCttgttcacactacaggattttaagccATGATTTGAGCCTGATTTTAAAGTTAATGAGCTTGCCAATAAATCAGGCTGTGATCTGAAAAAAATCGCTAATGGAGATC
>TCONS_00002083
ATGGAAATGAAGAATTTCAGTCAAGCAATCAAGGATGGGGACACCATGTGCCAACTCCGTCCACTGTGGCCAAGGGCTCACTATATTAAGGCTACAGCACTCAGGAGTGCTGGTAGCAGTGAAGAGGCTCTGCAGGAGTATTTATTCTGTGCGGCTTTGAAACCTGACTGGATTGCTGTAAAACTGGAGGCTCAGAAGaTTCTGAGCCACATGTTCTCTTCAGTCTTTGTAAATGATGGTCTGGCTACGTCCCTTCCAGCCTGCACCTCTCGTATTAAACCCACATCTCTCCTCAGTTCTCTTAATACCATTATTCCTAGAGATGGAACCAAAGCAGGCTGTTCGAAGgatCTGACTCTCAGTTGCAGTAAAATCAAAGATGGGAACTCTCAATTATCtgaaaatgtgaattgtgttggcCTCTCTTCACTATTTATTCCACCAGTTCTAAAAAGGAAATGGACTGAAAATTCTAAACAATCTGAGCCTCCAAGTAAACAGCTCAAAGAAGATCATGTGTTTTCATCTGCGGTGGTGAAACGGCAAGTTCCTTTGCAGCTTTTGGACAATGCTGACTTTGAATGTTCTCTTTGTATGAGACTGTTTTATGAGCCTGTCACCACACCCTGTGGACACACTTTTTGCCTCAAGTGTTTAGAACGTTGCTTGGACCACAATCCTAACTGTCCCCTCTGTAAGGAGAACCTCTCAGAGtaTCTGGCCACTAGAGCGTACTGCAAAACTCTTCTAATTGAAGAACTATTGCAGCAGTACTTGAGTGATGAACTAACAGAAAGGCGAAAAGTTTATGAAGAAGAGATGAAAGAACTGTCAAAGTTTGCAGACCACGGCTGTATGCTGGCAGTGAGAGATGTCAAGTTTTTTCCAGATGGGCGCTCAGTAGTGGACACCATAGGCATTGCTCGTTTTAAAGTTCTCAGTCATGGGCAGAGAGATGGATACCACACAGCCAAGATTGAATATTTGGAGGATAAAAAGGCTGAAGGAGAGGACTTGACTGAGCTCCTGAAGTTGCATGACTCTGTGTATGATCAGGCTATGGCCTGGTTCACTTCCCTTAAAGATGACATGAAGAATCAAATCATCAGCCATTTTGGACCACTACCTGTCAAAGACCCTGACCCACAGGGAAAACCCAATGGTCCTGCATGGTGTTGGTGGCTGTTGGCTGTGTTACCACTGGAAAACAAAGCCCAGCTTACAATTCTTGCGATGAACACTCTTAAAGGCAGACTGATTGCAATTCGCAGAGTCCTCATTTTTGTAACTCGCAAGCGGCCTCGATGA

Function

symbol description
si:ch1073-440b2.1 Predicted to enable metal ion binding activity. Orthologous to several human genes including LONRF2 (LON peptidase N-terminal domain and ring finger 2).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8303 Predicted to enable metal ion binding activity. Orthologous to several human genes including LONRF2 (LON peptidase N-terminal domain and ring finger 2).

Ensembl:

ensembl_id ENSDARG00000089138

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002082 False 2044 mRNA 0.42 11 28391631 28473487
TCONS_00002083 True 1308 mRNA 0.45 10 28392071 28473350

Neighbor

gene id symbol gene type direction distance location
XLOC_001277 BX571828.1 coding downstream 27033 28348958 ~ 28364598 (-)
XLOC_001276 NA coding downstream 75130 28308463 ~ 28316501 (-)
XLOC_001275 snapc3 coding downstream 301981 28067771 ~ 28089650 (-)
XLOC_001274 NA coding downstream 641073 27744798 ~ 27750558 (-)
XLOC_001273 si:dkey-29d5.2 coding downstream 647646 27738647 ~ 27743985 (-)
XLOC_001279 FO907124.1 coding upstream 121322 28594809 ~ 28607353 (-)
XLOC_001280 ednrba coding upstream 150699 28624186 ~ 28629471 (-)
XLOC_001281 NA coding upstream 234692 28708179 ~ 28709951 (-)
XLOC_001282 GK3P coding upstream 250330 28723817 ~ 28831848 (-)
XLOC_001283 timmdc1 coding upstream 359184 28832671 ~ 28861226 (-)
XLOC_001271 NA non-coding downstream 1366787 27018666 ~ 27024844 (-)
XLOC_001266 NA non-coding downstream 1721874 26665758 ~ 26669757 (-)
XLOC_001289 BX908780.3 non-coding upstream 693834 29167321 ~ 29168495 (-)
XLOC_001290 NA non-coding upstream 701015 29174502 ~ 29185227 (-)
XLOC_001291 NA non-coding upstream 703189 29176676 ~ 29178308 (-)
XLOC_001292 BX908780.4 non-coding upstream 849887 29323374 ~ 29326948 (-)

Expression


Co-expression Network