XLOC_001283 (timmdc1)


Basic Information

Item Value
gene id XLOC_001283
gene name timmdc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 28832671 ~ 28861226 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002091
CTTACTGATGTGTACTGCAGTGCGGCAGGATTTGTCACCTAAATGTGGAGGGACAGATGTAAAACAGCCTGGGGACTCACAGCCAGGTCATCTCAGAGCTCTTCTTGGCTTCACTCTTCCTTCTGTATATGCATCTGATTCCTCTACACAGATCTTACCAAAGCACATAGGCAAGCCAGAGTTTCCTGACACAGGATGGGACCGCATCAAAGATCTTTTCTATAACGTTGAAGGTCAGTACACAGAGGAGTTGAGAAATGTAGTAAAAAGTGGTATTGCTTCAGCCATAGTGGGGATGATCTATGGAGGCCTACCAGGAGCCAGGCATGCTCGTCAGAGGTTTATCCAGTGCAGCCAGGCTGAAATTTATCGAAACAGAGTGGATGCGGTGCGTGCAGCCCATAATGCAGCTATTCGTGGTTTTTTGCGATTTGGCTGGAGATGGAGCTGGAGGGTAGCAGCTTTTGTGACCCTGTTTAACACTGTAAATACTGGCTTGACAGTATACAGAGACCAAAATGCCCTCAGCCATTTCGCAGTTTCAGGTGCTGTCACAGGAGGAGTGTTCAGACTAAATCTTGGACTAAGAGGGCTGCTGTCTGGTACGATCATAGGAGTTATACTGGGGTTTCCGGCTGGAGTTTTAATTTTGGGTCTGCAGAATCTTGGAGGCGAGACCATGCGTGATAAGAGGCGAAGAGAAAGAAGAGAGTTGCATGAGCTGAGAGTCACTGAATGGAATGCTCGTCTAAAGGTTACAGATGATCTCATTGGAGAAATGAGCAGTCTAAAACATCAGGACTCTGAAATTGACCTTCAACAAGTAGAGGAGCTCCTCAGTCAACCTAGGAATGGGAATGCAGCAAAAGGCCCTTATAATCAGTAATATTGGAGACTCGGAGAACGTTAAAGTACACATTTTGTTTAGATTATTGTGCATGTGGAAATGTGTTCCAGatatttaaatctgaaaaatcagcatattaaataaaaactttttgctAAATATTGGATGTTGTACATGTTCCTGTATATATTAATATCTATATCAATATGCAAGTGTCTCAAGTCTCATGCATTGACACGCTTCTAGTTCATCCAGTTCACACAATCACACGTCTTGTATTTCTCGTAGTGAGATGTAGGTAATTGAAAACTTAATGCTGATATGCAATAAATGGACAAGACGCAAATGTCTGGAAGGAGCTGGAGTTGTGGATCTGATGCTAGAATTTAACATTTCTGTTCCTGGGTAAATTGTGTAACCCTTCCACGAAGAGGTTTGCTACTAAATTTTTTGTAACAAAAGCACAGATTGTAAGGAGAGAGTTGTTTACCTCAATTTAATTCATGCCTGGATTGTCTTTAAATGAAATAGTATGAGGTACACATTCACTTTAGGCTTCAACTTAAAGATGCAAAATTTTAAAAGTGCTATTGATCATAGTGTCTTTAAACAGTGTGCCAAGCAGCAGTGTTGGGTATGATTAGATGCTTTTTTTCTGACAAAACATGCTTAATCTACCATTTGCAGGGGCCAGGCACTGTAAAGCACTAGGATTAGTaattcaatttttaaattcaCCATTATTTCTACGGCACAGTGGAGattgtcaaagcagtttaacatgggggcaaaaaagacaataaaaagcctttaatatttcaaattgtGGAACATTCCAGCAAGTTACTCTTCTGCTTGACATTCCCAAAATGTTTTTAGAACGTCCCTGTCGATATTGAAGATGTTGTCTAGTAAAGTTCTCAGAACGTTCTGATGTTGTCACAATGTGGAGGTCTTCAAAGGTGTGGAAGGCGTTATTTGAGGGACTTTCACAGAACATTCACAACATTCTCAGAACCTTTAGGGTACCGTGCATTATTGGAAAATGTGGCGTTCTCATAACTTCCCAATTGGTGTTAAAGGTTATTGTCTAGTAACGTTCCCAGAATGTTCTGAGAAGGTCAAAGTTTGGAGTTTTTTACAACGGTGGGAACGTTATTTGGGGAACCTTCACAGAACAGGATGTTCTTAGGACATTAAGGGGATTACTAGGATACCTCTAGGCCTCCACACTACATTCCCAAAACGTTTTCAAAATCTAGAAACCAACCTAGAATGTTATTTTCTTGTCCTGAATGTTAGTGACAAAGAGAgctcaataaattaaattaaaagaaaaaataaattgtttaaaattttattaaaggaAAAACAAAGCATTTGTCAAAATATTCTAATATCACAATTGTTCTCTTTGTAACGTTATGTGACCatagaataaacaaaacattCTCCTAAAGTCATATTGGGAACATTACTACTGTATATGACTAAAAGAAGACCATGTGGGAATGTTCTGTAAATGTCACAAATGTTCTCTTTGTAATGTTATTAGGTGACCATAGAGTAACCTATATAGAAAGCCACATCCCCTAACCTGATTTCAACAAGAAAGACATGTTGCTGGATCAAGGATCCACCAAGGAGGACATGTTCCTGGGTCCTGGATGTTAATTCAGGATCGTGTTGTATTTAGTAAAATCATGATGTGCATAGAGCGCGCCCCCCTAAAGTCATACTGGGAACGTTGTTATATgaataaaagaacattttaagaacTTCCCTAATGTTCTGTAAAGGTTTGGGAGCTTAAGAGAAATTTTATGGAACGTTGTGCAAAGTTACACTTCTTGTCACATTAAGGCTAATCCACTGGAAATCAGCTCCACCAGCCCCAATCAAGCAAGGCAGAGGCAACAGGGATAAGGAACCAAAACCGCCAGTTTATGGAAGTGAAGAATGATGTAGATTTTTCTTGATGACCCTGACAAAAGTATCTCTTTTAGTGTCTGTAATACTAAACTATAAGTATACACGTtcacaattaatttttttgtcatcaaCCACTCATACAATCTGCCCCAAAGGGATTTGACAAtggaacaattaaaaaaaacatgttcctGGGATTCAATATCTTTCAAGCAAAAAATACAAGCATTGCTGTCTAAATTAAATCTTATTCTAATAAATTCGTTACATAGATATATgtcattaattgttttgaaatgtactTCTTTCATTTTAGGTAACAAGGGAAATGACAGGTATCTTTTTCTAACTTCAAGTGTCCGCTTTATAAAATCTCTCAGATAAAACTATTCTTTTAACACTAAGAGGAAAATATTCTTTTGTCAGTAGTGATCTTAAGACCTTGTTGTTACATTTAATATCCAAGAATgactaattatttattaacaaatcaACTAGTGCAGGTGTTATAGAAGAGTATTGCACTATACTTTTGGAAAATGTTGTACAAGCACAATTTTACTCCAAATAATGTTATCATTTGGAATAACAGGTGTATTTTACATAAGAGGAAATCATTATTTCTTAATGACTGGTTTGACAAAGGAGTTTGGAATTCATTTAATAGATGATGATGGTAATATGTTGAGTTATGATCATCTTAAGttaaaattcaattttaattGTGCATATAGAGAATTCTCTTTGGTTGTCAAAGCTATTCCTGTAGATTTTATAAGAGATTATGTTAAGGcagattttgaatttacaaaccaGAATGTTATCTTTGGTTTGCAtgaatgtgaaaataaaaataatacttatttcATAAACCTTGTTTTTTTGTTGGTCAAATTTTATATTCACACGAGCAAGTTTTGTAAGTGTAAACCTTTTTTCCCTgtatttaaaactgaaataaaaatttattttgattttattgaggGATCAACAAACTTAAAAGCAATATGAACAAGGAGTTTAATGAAGGACTTGGCACTTATGTTGACCTAAGTGAAAACCCCTGG
>TCONS_00002092
ATGGTCCATCTGAATGATAGGAGGCGGTAATGCACTTGTTAGTCTGCGATCAGCCGCTAAACcacaagaaaaagaagaagaagaaggaagtgGATATGTCAACATTGCATTGTTGGTAAAGGACTCTGTAATCTAAGTCGCTTACTGATGTGTACTGCAGTGCGGCAGGATTTGTCACCTAAATGTGGAGGGACAGATGTAAAACAGCCTGGGGACTCACAGCCAGGTCATCTCAGAGCTCTTCTTGGCTTCACTCTTCCTTCTGTATATGCATCTGATTCCTCTACACAGATCTTACCAAAGCACATAGGCAAGCCAGAGTTTCCTGACACAGGATGGGACCGCATCAAAGATCTTTTCTATAACGTTGAAGGTCAGTACACAGAGGAGTTGAGAAATGTAGTAAAAAGTGGTATTGCTTCAGCCATAGTGGGGATGATCTATGGAGGCCTACCAGGAGCCAGGCATGCTCGTCAGAGGTTTATCCAGTGCAGCCAGGCTGAAATTTATCGAAACAGAGTGGATGCGGTGCGTGCAGCCCATAATGCAGCTATTCGTGGTTTTTTGCGATTTGGCTGGAGATGGAGCTGGAGGGTAGCAGCTTTTGTGACCCTGTTTAACACTGTAAATACTGGCTTGACAGTATACAGAGACCAAAATGCCCTCAGCCATTTCGCAGTTTCAGGTGCTGTCACAGGAGGAGTGTTCAGACTAAATCTTGGACTAAGAGGGCTGCTGTCTGGTACGATCATAGGAGTTATACTGGGGTTTCCGGCTGGAGTTTTAATTTTGGGTCTGCAGAATCTTGGAGGCGAGACCATGCGTGATAAGAGGCGAAGAGAAAGAAGAGAGTTGCATGAGCTGAGAGTCACTGAATGGAATGCTCGTCTAAAGGTTACAGATGATCTCATTGGAGAAATGAGCAGTCTAAAACATCAGGACTCTGAAATTGACCTTCAACAAGTAGAGGAGCTCCTCAGTCAACCTAGGAATGGGAATGCAGCAAAAGGCCCTTATAATCAGTAATATTGGAGACTCGGAGAACGTTAAAGTACACATTTTGTTTAGATTATTGTGCATGTGGAAATGTGTTCCAGatatttaaatctgaaaaatcagcatattaaataaaaactttttgctAAATATTGGA
>TCONS_00002093
tgGATATGTCAACATTGCATTGTTGGTAAAGGACTCTGTAATCTAAGTCGTGCGGCAGGATTTGTCACCTAAATGTGGAGGGACAGATGTAAAACAGCCTGGGGACTCACAGCCAGGTCATCTCAGAGCTCTTCTTGGCTTCACTCTTCCTTCTGTATATGCATCTGATTCCTCTACACAGATCTTACCAAAGCACATAGGCAAGCCAGAGTTTCCTGACACAGGATGGGACCGCATCAAAGATCTTTTCTATAACGTTGAAGGTCAGTACACAGAGGAGTTGAGAAATGTAGTAAAAAGTGGTATTGCTTCAGCCATAGTGGGGATGATCTATGGAGGCCTACCAGGAGCCAGGCATGCTCGTCAGAGGTTTATCCAGTGCAGCCAGGCTGAAATTTATCGAAACAGAGTGGATGCGGTGCGTGCAGCCCATAATGCAGCTATTCGTGGTTTTTTGCGATTTGGCTGGAGATGGAGCTGGAGGGTAGCAGCTTTTGTGACCCTGTTTAACACTGTAAATACTGGCTTGACAGTATACAGAGACCAAAATGCCCTCAGCCATTTCGCAGTTTCAGGTGCTGTCACAGGAGGAGTGTTCAGACTAAATCTTGGACTAAGAGGGCTGCTGTCTGGTACGATCATAGGAGTTATACTGGGGTTTCCGGCTGGAGTTTTAATTTTGGGTCTGCAGAATCTTGGAGGCGAGACCATGCGTGATAAGAGGCGAAGAGAAAGAAGAGAGTTGCATGAGCTGAGAGTCACTGAATGGTTTGTTC

Function

symbol description
timmdc1 Predicted to be located in mitochondrial membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 31. Orthologous to human TIMMDC1 (translocase of inner mitochondrial membrane domain containing 1).

GO:

id name namespace
GO:0031966 mitochondrial membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-050417-369 Predicted to be located in mitochondrial membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 31. Orthologous to human TIMMDC1 (translocase of inner mitochondrial membrane domain containing 1).

Ensembl:

ensembl_id ENSDARG00000053466

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002091 False 3846 mRNA 0.37 7 28832671 28860732
TCONS_00002092 False 1153 mRNA 0.44 8 28835504 28861226
TCONS_00002093 True 776 processed_transcript 0.47 7 28835859 28861136

Neighbor

gene id symbol gene type direction distance location
XLOC_001282 GK3P coding downstream 823 28723817 ~ 28831848 (-)
XLOC_001281 NA coding downstream 122720 28708179 ~ 28709951 (-)
XLOC_001280 ednrba coding downstream 203200 28624186 ~ 28629471 (-)
XLOC_001279 FO907124.1 coding downstream 225318 28594809 ~ 28607353 (-)
XLOC_001278 si:ch1073-440b2.1 coding downstream 359184 28391631 ~ 28473487 (-)
XLOC_001284 poglut1 coding upstream 13163 28874389 ~ 28890028 (-)
XLOC_001285 pwp2h coding upstream 37719 28898945 ~ 28950366 (-)
XLOC_001286 gpm6ba coding upstream 100427 28961653 ~ 29045426 (-)
XLOC_001287 gemin8 coding upstream 197042 29058268 ~ 29061327 (-)
XLOC_001288 hsf2bp coding upstream 240785 29102011 ~ 29139183 (-)
XLOC_001277 BX571828.1 non-coding downstream 468073 28348958 ~ 28364598 (-)
XLOC_001276 NA non-coding downstream 516170 28308463 ~ 28316501 (-)
XLOC_001274 NA non-coding downstream 1082113 27744798 ~ 27750558 (-)
XLOC_001271 NA non-coding downstream 1807827 27018666 ~ 27024844 (-)
XLOC_001289 BX908780.3 non-coding upstream 306095 29167321 ~ 29168495 (-)
XLOC_001290 NA non-coding upstream 313276 29174502 ~ 29185227 (-)
XLOC_001291 NA non-coding upstream 315450 29176676 ~ 29178308 (-)
XLOC_001292 BX908780.4 non-coding upstream 462148 29323374 ~ 29326948 (-)
XLOC_001294 NA non-coding upstream 792723 29653949 ~ 29658777 (-)

Expression


Co-expression Network