XLOC_001285 (pwp2h)


Basic Information

Item Value
gene id XLOC_001285
gene name pwp2h
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 28898945 ~ 28950366 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002096
GAACACGTGCGTTTAGAGTGTGTTTTTTTCACGTGTGGATCCATGGTATTGATGCTTGAAAGATCAGTTGCAACGTCTTAGAAAATATGAAGTTTGCGTACAAgttTTCAAACTTATTAGGGGCATTTTATCGCCAAGGGAACATATCTTTCTCTAAAAATGGGGATTCTGTCATCAGTCCTGTAGGCAACCGCATCTCCGTCTTTGATCTGAAAAATAACAAGTCAGAAACCTTACCGGTGTCCACCTCAAAGAACATTGCTTGTTTTGACATCTCTCCAGACGGAAATCTTGCTATACTAATAGATGAAGATGGAGCGGCAATACTGGTTAGCTTGGTCACTCGGGCAGTACTTCACCATCATCACTTCCATAATCCTGTTCATAATGTTTCCTTTTCCCCTGATGGAAGGAAGTTTGTGGTAACAAAGGAGAATGTGGCTCTAATGTATCATGCACCGGGAAGAAACAAAGAATTTAATGCATTTGCATTAAACAAGACTTTTTATGGACCATTTGATGAAATGACTTGTATTGACTGGACAGACGATTCGAAGTGCTTTGCTGTTGGAAGTAAGGACATGACAACCTGGATCTTTGGGGCAGAAAGATGGGCAAATCTCATCTACTACTCACTTGGTGGTCATAAGGACATCATAGTGGGCTGTTTCTTTGAAAAAGACAGCTTGGATatgtaCACAGTAAGTCAGGAAGGCACTTTATGTATATGGGAAAGTGACACTGATCTAGAAGGCTTACGAAAGGGCCCAAAATACGCTGAGAGAAAGGAAAAGGAGCAGAAAAAACTGAGAGTTTTAGAAATGGAGGAAGATGAAGCTAATGACATTGAGATTATGGGGGAGGATGGAGAGACCAGAGGAGATGTCATCAAAGGAAGTGCCGAAACACCTGAAGAAGTGGAAGGCATAAAAAATGTTCGTTATTTACAGAAAAGCAAATACTATTTTAACAAAGAAGGGGATTTCAACAAACTGACAGCTGCCGCCTTTCACAAGAGAACACACATACTTGTGACAGGGTTTGCATCTGGAGCTTTTCACCTGCATGAATTGCCAGGTTTTGACCTCATTCACTCACTCAGCATTTCAGATCAGAGGATTTCGGCCATTTCTCTGAATCCCACTGGTGACTGGATTAGCTTTGGCTGCTCAGGTCTGGGCCAGCTGTTGGTTTGGGAATGGCAGAGCGAGTCCTATGTGTTTAAACAGCAAGGACACTTTAACAACATGAACTCTTTGGCTTATTCACCTGATGGTCAGTATCTTGCTACTGGAGGGGATGATGGCAAGGTGAAGGTGTGGAACACCAACAGTGGTCTCTGTTTTGTGACATTCACCGAGCACTCCAGCGGTGTCACCGAAGTTGCCTTTACCTCCAGTGGTTTCGTGGTGGTCAGTGCCTCACTAGATGGCACTGTTAGAGCTTTTGACCTGCACAGGTACCGGAATTTCCGTACCATGACGTCACCACGACCCGCCCAGTTCTCCTCTCTGGCAGTGGACGGTAGTGGGGAATTGGTGTGTGCTGGTTCTCAGGACTCTTTTGAGATCTTTCTGTGGTCTATGCAGACTGGACGACTGTTAGAGGTGCTTAGTGGTCATGAGGGTCCTGTCAGTAACTTGTGCTTCAGTCCAGTCCAGTCTGTTCTTGCTAGTGTGTCATGGGACAAAACTGTCCGGCTATGGGACATGTTGGACAGCTGGCAGACCAAAGAGACGTTGCAACTCACCTCTGATGGGCTTGCTGTAACATATCATCCTAATGGTATGGAGTTAGCAGTTGCTTCTCTGGATGGTGAAATCACATTCTGGAACCCTCAGACTGGAAGACAGACTGGCTCTATCACTGGCCGCCATGACCTGCAAATGGGACGCAAAGAGTCTGAAAAGATCACTGCTAAACAATCTGCCAAGGGAAAGTCTTTTACCACCTTGTGCTACTCAGCGGATGGTGAATCGATCCTTACAGGTGGGAAGTCAAAGTTTGTGTGCATTTATAACATCAAGGAACATCTCCTGATGAAGAAGTTTGAGATCTCCTGTAATCTCTCTCTGGATGCAATGGAGGAATTCCTTGACAGGCGTAAGATGACCGAGTTTGGTAGTCTGTCTTTAGTGGATGAAGGCACTGGGGATGGAAACGGAGTGGAGCTCAGTCTTCCTGGAGTCAAGAAAGGTGATATGAGCACCCGATGCTTTAAACCAGAGATCAGTGTTAGCTCTCTTCGCTTCTCACCTACTGGGCGCAGTTGGGCTGCAGCATCCACTGAAGGTTTGCTGATCTACTCTCTTGATGCTGCACTAGTGTTTGACCCTTATGATCTGGATATTGATGTCACACCAACAAGTATACGTCAGCAGATTACCAAAAAAGAGTGGGCTTCCGCCATCTTGCTGTCTTTTCGCCTAAATGAAATTCTGCTCATTAGAGAAGTTCTGGAGGCAATCCCTTTTGATCAAATTACAGTTGTATGCAGCTCATTGCCAGATGTGTATGTGGATAAGCTTCTAAACTTTGTGGCCTCAACACTGGAAAAGTCTAACCACCTGCAGTTCTACCTTACCTGGGCTCAGTGTTTGCTCACTTTACATGGACAGAAACTCAAGAATCGACCTGGATTTGTACTGCCTACTGTACAGCAGCTGCTGAAGAGCATCCAAAGACACAGTGATGATCTGTCTAAACTTTGCGATTGGAATATTTACAACATTCGCTACGCTGCTGCTCTGGCTAAGCAGAGAGGACTGAAAAGAACAGCATCTGAGATCTACGGTGCTGAAAAAGAGGACTCATCAGAGGCAATGGATTCAGAGGGTGATGAGGAGAATATGACAAATGAGCCTATAATGCTGGAAAATGCCATTCAACTTTCAGACTAATCATTAATAAAGCCAGTACATCACCTCTAAACAAATGGAAACAAGTTAGAATAGGAAAAGACAATTTTATCTTGTTGTGTTGGTCCCTGTAGTCTCTCAATGAAAATGTGTTCAGAAAGCACCTGCAAACCTCTTAGAACTAACATAATGCTGTTTAGATTTCGATGCATGAAATATTACAATAGGCTGAACTATTGATGATACTTTTTGATACTTGTATGCGGTAAAGGTTTTTGCCTTATTGTAGGAAAAAACGTAAAAATTTTAGAGCCAGCAATTGCTTTCGAATTGGTTCAGACCTAAGCAGCTTCTCTAGAACGATTTTTTCTACATGGGCCAGTGACGCTATCAGAATCAGCAAATATTATTCGTTTATAATGATATGCATTTCATTCATCTGTAAATGTAATGACAGACTGCAGGTTCAGACTGACAGCAAAAATCGCCAATACAAAAGGTGGCTATAGAATTTGCTTTCTTTATACTTGCAGTTTGAAACAATGTTGATTAAACATAAGTACTTTTAATAATTCTA
>TCONS_00002097
GATGCATTGCAGACCAAAAATTCTAGTGTGGTTGTCCTCCCCAAGTAAAACGGTTGCTTTCCAGGTGAAGGTGTGGAACACCAACAGTGGTCTCTGTTTTGTGACATTCACCGAGCACTCCAGCGGTGTCACCGAAGTTGCCTTTACCTCCAGTGGTTTCGTGGTGGTCAGTGCCTCACTAGATGGCACTGTTAGAGCTTTTGACCTGCACAGGTACCGGAATTTCCGTACCATGACGTCACCACGACCCGCCCAGTTCTCCTCTCTGGCAGTGGACGGTAGTGGGGAATTGGTGTGTGCTGGTTCTCAGGACTCTTTTGAGATCTTTCTGTGGTCTATGCAGACTGGACGACTGTTAGAGGTGCTTAGTGGTCATGAGGGTCCTGTCAGTAACTTGTGCTTCAGTCCAGTCCAGTCTGTTCTTGCTAGTGTGTCATGGGACAAAACTGTCCGGCTATGGGACATGTTGGACAGCTGGCAGACCAAAGAGACGTTGCAACTCACCTCTGATGGGCTTGCTGTAACATATCATCCTAATGGTATGGAGTTAGCAGTTGCTTCTCTGGATGGTGAAATCACATTCTGGAACCCTCAGACTGGAAGACAGACTGGCTCTATCACTGGCCGCCATGACCTGCAAATGGGACGCAAAGAGTCTGAAAAGATCACTGCTAAACAATCTGCCAAGGGAAAGT

Function

symbol description
pwp2h Acts upstream of or within digestive system development and ribosomal small subunit assembly. Predicted to be part of Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome. Is expressed in several structures, including brain; digestive system; head; immature eye; and mesoderm. Orthologous to human PWP2 (PWP2 small subunit processome component).

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0055123 digestive system development biological_process
GO:0032040 small-subunit processome cellular_component
GO:0034388 Pwp2p-containing subcomplex of 90S preribosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-021031-3 Acts upstream of or within digestive system development and ribosomal small subunit assembly. Predicted to be part of Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome. Is expressed in several structures, including brain; digestive system; head; immature eye; and mesoderm. Orthologous to human PWP2 (PWP2 small subunit processome component).

Ensembl:

ensembl_id ENSDARG00000037109

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002096 False 3435 mRNA 0.43 21 28898945 28950366
TCONS_00002097 True 695 lncRNA 0.50 4 28913589 28923849

Neighbor

gene id symbol gene type direction distance location
XLOC_001284 poglut1 coding downstream 8917 28874389 ~ 28890028 (-)
XLOC_001283 timmdc1 coding downstream 37719 28832671 ~ 28861226 (-)
XLOC_001282 GK3P coding downstream 67097 28723817 ~ 28831848 (-)
XLOC_001281 NA coding downstream 188994 28708179 ~ 28709951 (-)
XLOC_001280 ednrba coding downstream 269474 28624186 ~ 28629471 (-)
XLOC_001286 gpm6ba coding upstream 11287 28961653 ~ 29045426 (-)
XLOC_001287 gemin8 coding upstream 107902 29058268 ~ 29061327 (-)
XLOC_001288 hsf2bp coding upstream 151645 29102011 ~ 29139183 (-)
XLOC_001289 BX908780.3 coding upstream 216955 29167321 ~ 29168495 (-)
XLOC_001290 NA coding upstream 224136 29174502 ~ 29185227 (-)
XLOC_001277 BX571828.1 non-coding downstream 534347 28348958 ~ 28364598 (-)
XLOC_001276 NA non-coding downstream 582444 28308463 ~ 28316501 (-)
XLOC_001274 NA non-coding downstream 1148387 27744798 ~ 27750558 (-)
XLOC_001271 NA non-coding downstream 1874101 27018666 ~ 27024844 (-)
XLOC_001291 NA non-coding upstream 226310 29176676 ~ 29178308 (-)
XLOC_001292 BX908780.4 non-coding upstream 373008 29323374 ~ 29326948 (-)
XLOC_001294 NA non-coding upstream 703583 29653949 ~ 29658777 (-)

Expression


Co-expression Network