RNA id: TCONS_00002097


Basic Information

Item Value
RNA id TCONS_00002097
length 695
lncRNA type retained_intron
GC content 0.50
exon number 4
gene id XLOC_001285
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 28898945 ~ 28950366 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGCATTGCAGACCAAAAATTCTAGTGTGGTTGTCCTCCCCAAGTAAAACGGTTGCTTTCCAGGTGAAGGTGTGGAACACCAACAGTGGTCTCTGTTTTGTGACATTCACCGAGCACTCCAGCGGTGTCACCGAAGTTGCCTTTACCTCCAGTGGTTTCGTGGTGGTCAGTGCCTCACTAGATGGCACTGTTAGAGCTTTTGACCTGCACAGGTACCGGAATTTCCGTACCATGACGTCACCACGACCCGCCCAGTTCTCCTCTCTGGCAGTGGACGGTAGTGGGGAATTGGTGTGTGCTGGTTCTCAGGACTCTTTTGAGATCTTTCTGTGGTCTATGCAGACTGGACGACTGTTAGAGGTGCTTAGTGGTCATGAGGGTCCTGTCAGTAACTTGTGCTTCAGTCCAGTCCAGTCTGTTCTTGCTAGTGTGTCATGGGACAAAACTGTCCGGCTATGGGACATGTTGGACAGCTGGCAGACCAAAGAGACGTTGCAACTCACCTCTGATGGGCTTGCTGTAACATATCATCCTAATGGTATGGAGTTAGCAGTTGCTTCTCTGGATGGTGAAATCACATTCTGGAACCCTCAGACTGGAAGACAGACTGGCTCTATCACTGGCCGCCATGACCTGCAAATGGGACGCAAAGAGTCTGAAAAGATCACTGCTAAACAATCTGCCAAGGGAAAGT

Function

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0055123 digestive system development biological_process
GO:0032040 small-subunit processome cellular_component
GO:0034388 Pwp2p-containing subcomplex of 90S preribosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-021031-3 Acts upstream of or within digestive system development and ribosomal small subunit assembly. Predicted to be part of Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome. Is expressed in several structures, including brain; digestive system; head; immature eye; and mesoderm. Orthologous to human PWP2 (PWP2 small subunit processome component).

Ensembl:

ensembl_id ENSDART00000143863

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002090 lncRNA downstream 105016 28752897 ~ 28808573 (-) True XLOC_001282
TCONS_00003426 lncRNA downstream 203638 28708179 ~ 28709951 (-) False XLOC_001281
TCONS_00003425 lncRNA downstream 597088 28308463 ~ 28316501 (-) False XLOC_001276
TCONS_00002956 lncRNA downstream 1163031 27744798 ~ 27750558 (-) False XLOC_001274
TCONS_00003424 lncRNA downstream 1166964 27745816 ~ 27746625 (-) True XLOC_001274
TCONS_00002106 lncRNA upstream 243472 29167321 ~ 29168495 (-) True XLOC_001289
TCONS_00002107 lncRNA upstream 250653 29174502 ~ 29175553 (-) False XLOC_001290
TCONS_00003427 lncRNA upstream 250653 29174502 ~ 29175555 (-) False XLOC_001290
TCONS_00002957 lncRNA upstream 251054 29174903 ~ 29175551 (-) False XLOC_001290
TCONS_00003428 lncRNA upstream 252827 29176676 ~ 29178308 (-) True XLOC_001291
TCONS_00002095 mRNA downstream 23561 28874399 ~ 28890028 (-) True XLOC_001284
TCONS_00002094 mRNA downstream 27670 28874389 ~ 28885919 (-) False XLOC_001284
TCONS_00002092 mRNA downstream 52363 28835504 ~ 28861226 (-) False XLOC_001283
TCONS_00002091 mRNA downstream 52857 28832671 ~ 28860732 (-) False XLOC_001283
TCONS_00002088 mRNA downstream 81741 28724041 ~ 28831848 (-) False XLOC_001282
TCONS_00002098 mRNA upstream 37804 28961653 ~ 29045426 (-) True XLOC_001286
TCONS_00002099 mRNA upstream 134419 29058268 ~ 29061285 (-) False XLOC_001287
TCONS_00002100 mRNA upstream 134423 29058272 ~ 29061291 (-) False XLOC_001287
TCONS_00002102 mRNA upstream 134841 29058690 ~ 29061287 (-) True XLOC_001287
TCONS_00002103 mRNA upstream 178162 29102011 ~ 29139183 (-) False XLOC_001288
TCONS_00002093 other downstream 52453 28835859 ~ 28861136 (-) True XLOC_001283
TCONS_00002089 other downstream 154120 28749576 ~ 28759469 (-) False XLOC_001282
TCONS_00002086 other downstream 203638 28708241 ~ 28709951 (-) True XLOC_001281
TCONS_00002081 other downstream 548991 28348958 ~ 28364598 (-) True XLOC_001277
TCONS_00002080 other downstream 604577 28308616 ~ 28309012 (-) True XLOC_001276
TCONS_00002101 other upstream 134423 29058272 ~ 29061327 (-) False XLOC_001287
TCONS_00002105 other upstream 187412 29111261 ~ 29138575 (-) True XLOC_001288
TCONS_00002108 other upstream 251054 29174903 ~ 29175700 (-) False XLOC_001290
TCONS_00002109 other upstream 251613 29175462 ~ 29185227 (-) True XLOC_001290
TCONS_00002121 other upstream 1320682 30244531 ~ 30244645 (-) True XLOC_001298

Expression Profile

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