RNA id: TCONS_00002091


Basic Information

Item Value
RNA id TCONS_00002091
length 3846
RNA type mRNA
GC content 0.37
exon number 7
gene id XLOC_001283
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 28832671 ~ 28861226 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTACTGATGTGTACTGCAGTGCGGCAGGATTTGTCACCTAAATGTGGAGGGACAGATGTAAAACAGCCTGGGGACTCACAGCCAGGTCATCTCAGAGCTCTTCTTGGCTTCACTCTTCCTTCTGTATATGCATCTGATTCCTCTACACAGATCTTACCAAAGCACATAGGCAAGCCAGAGTTTCCTGACACAGGATGGGACCGCATCAAAGATCTTTTCTATAACGTTGAAGGTCAGTACACAGAGGAGTTGAGAAATGTAGTAAAAAGTGGTATTGCTTCAGCCATAGTGGGGATGATCTATGGAGGCCTACCAGGAGCCAGGCATGCTCGTCAGAGGTTTATCCAGTGCAGCCAGGCTGAAATTTATCGAAACAGAGTGGATGCGGTGCGTGCAGCCCATAATGCAGCTATTCGTGGTTTTTTGCGATTTGGCTGGAGATGGAGCTGGAGGGTAGCAGCTTTTGTGACCCTGTTTAACACTGTAAATACTGGCTTGACAGTATACAGAGACCAAAATGCCCTCAGCCATTTCGCAGTTTCAGGTGCTGTCACAGGAGGAGTGTTCAGACTAAATCTTGGACTAAGAGGGCTGCTGTCTGGTACGATCATAGGAGTTATACTGGGGTTTCCGGCTGGAGTTTTAATTTTGGGTCTGCAGAATCTTGGAGGCGAGACCATGCGTGATAAGAGGCGAAGAGAAAGAAGAGAGTTGCATGAGCTGAGAGTCACTGAATGGAATGCTCGTCTAAAGGTTACAGATGATCTCATTGGAGAAATGAGCAGTCTAAAACATCAGGACTCTGAAATTGACCTTCAACAAGTAGAGGAGCTCCTCAGTCAACCTAGGAATGGGAATGCAGCAAAAGGCCCTTATAATCAGTAATATTGGAGACTCGGAGAACGTTAAAGTACACATTTTGTTTAGATTATTGTGCATGTGGAAATGTGTTCCAGatatttaaatctgaaaaatcagcatattaaataaaaactttttgctAAATATTGGATGTTGTACATGTTCCTGTATATATTAATATCTATATCAATATGCAAGTGTCTCAAGTCTCATGCATTGACACGCTTCTAGTTCATCCAGTTCACACAATCACACGTCTTGTATTTCTCGTAGTGAGATGTAGGTAATTGAAAACTTAATGCTGATATGCAATAAATGGACAAGACGCAAATGTCTGGAAGGAGCTGGAGTTGTGGATCTGATGCTAGAATTTAACATTTCTGTTCCTGGGTAAATTGTGTAACCCTTCCACGAAGAGGTTTGCTACTAAATTTTTTGTAACAAAAGCACAGATTGTAAGGAGAGAGTTGTTTACCTCAATTTAATTCATGCCTGGATTGTCTTTAAATGAAATAGTATGAGGTACACATTCACTTTAGGCTTCAACTTAAAGATGCAAAATTTTAAAAGTGCTATTGATCATAGTGTCTTTAAACAGTGTGCCAAGCAGCAGTGTTGGGTATGATTAGATGCTTTTTTTCTGACAAAACATGCTTAATCTACCATTTGCAGGGGCCAGGCACTGTAAAGCACTAGGATTAGTaattcaatttttaaattcaCCATTATTTCTACGGCACAGTGGAGattgtcaaagcagtttaacatgggggcaaaaaagacaataaaaagcctttaatatttcaaattgtGGAACATTCCAGCAAGTTACTCTTCTGCTTGACATTCCCAAAATGTTTTTAGAACGTCCCTGTCGATATTGAAGATGTTGTCTAGTAAAGTTCTCAGAACGTTCTGATGTTGTCACAATGTGGAGGTCTTCAAAGGTGTGGAAGGCGTTATTTGAGGGACTTTCACAGAACATTCACAACATTCTCAGAACCTTTAGGGTACCGTGCATTATTGGAAAATGTGGCGTTCTCATAACTTCCCAATTGGTGTTAAAGGTTATTGTCTAGTAACGTTCCCAGAATGTTCTGAGAAGGTCAAAGTTTGGAGTTTTTTACAACGGTGGGAACGTTATTTGGGGAACCTTCACAGAACAGGATGTTCTTAGGACATTAAGGGGATTACTAGGATACCTCTAGGCCTCCACACTACATTCCCAAAACGTTTTCAAAATCTAGAAACCAACCTAGAATGTTATTTTCTTGTCCTGAATGTTAGTGACAAAGAGAgctcaataaattaaattaaaagaaaaaataaattgtttaaaattttattaaaggaAAAACAAAGCATTTGTCAAAATATTCTAATATCACAATTGTTCTCTTTGTAACGTTATGTGACCatagaataaacaaaacattCTCCTAAAGTCATATTGGGAACATTACTACTGTATATGACTAAAAGAAGACCATGTGGGAATGTTCTGTAAATGTCACAAATGTTCTCTTTGTAATGTTATTAGGTGACCATAGAGTAACCTATATAGAAAGCCACATCCCCTAACCTGATTTCAACAAGAAAGACATGTTGCTGGATCAAGGATCCACCAAGGAGGACATGTTCCTGGGTCCTGGATGTTAATTCAGGATCGTGTTGTATTTAGTAAAATCATGATGTGCATAGAGCGCGCCCCCCTAAAGTCATACTGGGAACGTTGTTATATgaataaaagaacattttaagaacTTCCCTAATGTTCTGTAAAGGTTTGGGAGCTTAAGAGAAATTTTATGGAACGTTGTGCAAAGTTACACTTCTTGTCACATTAAGGCTAATCCACTGGAAATCAGCTCCACCAGCCCCAATCAAGCAAGGCAGAGGCAACAGGGATAAGGAACCAAAACCGCCAGTTTATGGAAGTGAAGAATGATGTAGATTTTTCTTGATGACCCTGACAAAAGTATCTCTTTTAGTGTCTGTAATACTAAACTATAAGTATACACGTtcacaattaatttttttgtcatcaaCCACTCATACAATCTGCCCCAAAGGGATTTGACAAtggaacaattaaaaaaaacatgttcctGGGATTCAATATCTTTCAAGCAAAAAATACAAGCATTGCTGTCTAAATTAAATCTTATTCTAATAAATTCGTTACATAGATATATgtcattaattgttttgaaatgtactTCTTTCATTTTAGGTAACAAGGGAAATGACAGGTATCTTTTTCTAACTTCAAGTGTCCGCTTTATAAAATCTCTCAGATAAAACTATTCTTTTAACACTAAGAGGAAAATATTCTTTTGTCAGTAGTGATCTTAAGACCTTGTTGTTACATTTAATATCCAAGAATgactaattatttattaacaaatcaACTAGTGCAGGTGTTATAGAAGAGTATTGCACTATACTTTTGGAAAATGTTGTACAAGCACAATTTTACTCCAAATAATGTTATCATTTGGAATAACAGGTGTATTTTACATAAGAGGAAATCATTATTTCTTAATGACTGGTTTGACAAAGGAGTTTGGAATTCATTTAATAGATGATGATGGTAATATGTTGAGTTATGATCATCTTAAGttaaaattcaattttaattGTGCATATAGAGAATTCTCTTTGGTTGTCAAAGCTATTCCTGTAGATTTTATAAGAGATTATGTTAAGGcagattttgaatttacaaaccaGAATGTTATCTTTGGTTTGCAtgaatgtgaaaataaaaataatacttatttcATAAACCTTGTTTTTTTGTTGGTCAAATTTTATATTCACACGAGCAAGTTTTGTAAGTGTAAACCTTTTTTCCCTgtatttaaaactgaaataaaaatttattttgattttattgaggGATCAACAAACTTAAAAGCAATATGAACAAGGAGTTTAATGAAGGACTTGGCACTTATGTTGACCTAAGTGAAAACCCCTGG

Function

GO:

id name namespace
GO:0031966 mitochondrial membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-050417-369 Predicted to be located in mitochondrial membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 31. Orthologous to human TIMMDC1 (translocase of inner mitochondrial membrane domain containing 1).

Ensembl:

ensembl_id ENSDART00000177588

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002090 lncRNA downstream 24098 28752897 ~ 28808573 (-) True XLOC_001282
TCONS_00003426 lncRNA downstream 122720 28708179 ~ 28709951 (-) False XLOC_001281
TCONS_00003425 lncRNA downstream 516170 28308463 ~ 28316501 (-) False XLOC_001276
TCONS_00002956 lncRNA downstream 1082113 27744798 ~ 27750558 (-) False XLOC_001274
TCONS_00003424 lncRNA downstream 1086046 27745816 ~ 27746625 (-) True XLOC_001274
TCONS_00002097 lncRNA upstream 52857 28913589 ~ 28923849 (-) True XLOC_001285
TCONS_00002106 lncRNA upstream 306589 29167321 ~ 29168495 (-) True XLOC_001289
TCONS_00002107 lncRNA upstream 313770 29174502 ~ 29175553 (-) False XLOC_001290
TCONS_00003427 lncRNA upstream 313770 29174502 ~ 29175555 (-) False XLOC_001290
TCONS_00002957 lncRNA upstream 314171 29174903 ~ 29175551 (-) False XLOC_001290
TCONS_00002088 mRNA downstream 823 28724041 ~ 28831848 (-) False XLOC_001282
TCONS_00002087 mRNA downstream 83067 28723817 ~ 28749604 (-) False XLOC_001282
TCONS_00002085 mRNA downstream 203200 28624186 ~ 28629471 (-) True XLOC_001280
TCONS_00002084 mRNA downstream 225318 28594809 ~ 28607353 (-) True XLOC_001279
TCONS_00002082 mRNA downstream 359184 28391631 ~ 28473487 (-) False XLOC_001278
TCONS_00002094 mRNA upstream 13657 28874389 ~ 28885919 (-) False XLOC_001284
TCONS_00002095 mRNA upstream 13667 28874399 ~ 28890028 (-) True XLOC_001284
TCONS_00002096 mRNA upstream 38213 28898945 ~ 28950366 (-) False XLOC_001285
TCONS_00002098 mRNA upstream 100921 28961653 ~ 29045426 (-) True XLOC_001286
TCONS_00002099 mRNA upstream 197536 29058268 ~ 29061285 (-) False XLOC_001287
TCONS_00002089 other downstream 73202 28749576 ~ 28759469 (-) False XLOC_001282
TCONS_00002086 other downstream 122720 28708241 ~ 28709951 (-) True XLOC_001281
TCONS_00002081 other downstream 468073 28348958 ~ 28364598 (-) True XLOC_001277
TCONS_00002080 other downstream 523659 28308616 ~ 28309012 (-) True XLOC_001276
TCONS_00002079 other downstream 743125 28088148 ~ 28089546 (-) True XLOC_001275
TCONS_00002101 other upstream 197540 29058272 ~ 29061327 (-) False XLOC_001287
TCONS_00002105 other upstream 250529 29111261 ~ 29138575 (-) True XLOC_001288
TCONS_00002108 other upstream 314171 29174903 ~ 29175700 (-) False XLOC_001290
TCONS_00002109 other upstream 314730 29175462 ~ 29185227 (-) True XLOC_001290
TCONS_00002121 other upstream 1383799 30244531 ~ 30244645 (-) True XLOC_001298

Expression Profile

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