RNA id: TCONS_00003426


Basic Information

Item Value
RNA id TCONS_00003426
length 1734
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id XLOC_001281
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 28708179 ~ 28709951 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAAACGGAAAGTGGACGCTGAGAAGAGGGGGTTTCAAGCCAGGTGGGAGGCAAAGTACATGTTCACGGAGGTAAAAGGGAAACTTGTGTGTCttctgtgtggaaacattttggcTGTAATGAAAGAATATAATCTAAGAAGGCACAATGAAGCGTCTCagacacacaaagacaaacacaaGAATATGAACACGGAACAAAGGCTATAGAAGGTGGAagaattaaaataagattttaagtCCCGACAGGCTCTGTTCACGAAAGCCAAATCACAAAGCGAGGCTGCTGTCAAGGCCAGTTTTATTGTGGCAGAAGAGATTGCAAAATCAGCCCGGCCATTTACAGACAGAGTTTATCAGAAATTGTATGCTTAAAGTTTGTGACGCAGTGTTCCCAGACAAAAGGCAACTATTTTCAAATGTGAGTCTGAGCAGAAACACCATTGCTGAACAGCTTTTCACCCATCTAAAAGAACAGCTTGTGGAAAAGGGGAAAATATTTCATCGCATATTCCCTTGCGGTGGATGAGAGCACCAACACATCTGACATTGCCCAGCTGTCAATTTTCATCCGTGGAGTGGACTTCAGCCTGGGCATAACAGAAGAGTTTTTGGCATTACGTCCTATGCATGGTACAACTACAGGATGTGTAAATGAGATGGAGCTGCTGTGGGGAAAACTTGTGGGATTGACTACAGATGGAGCACCTGCGATGTGTGGGCACAGGAGTGGATTAGTTGCAAGGATGCGGGAGGAAAAAGTCACAGATGATCTGACAACTTATCACTGTATCATACAGGAGTCGTTGTGTGGCAAAGCCTTGAAAATGGAACATGTTATGAGCACCATAACACGAGCAGTTAACTTCATCAGAGAAAGAGGCCAGTTCAAGGCATTTCTTGGCAAATTAGATACAGAGTATGGTGACTTGCCCTATCACACAGAGGTGCAATGGTTAAGCCAGGGAAAGGTGCTGCAAAGATGTTTCGAGCTGCGTGAGAAGATCTGTCTGTTCATGGAAAGCATAGGGAAAGACTCAACAGAGCTCCGAGATGAAACGTTCCTGTGTGAAATGGCGCTTTTACACGACATCACGAGCCATCTGAATGTGATGAACCTGCAGCTGCTGGGACGAAGGCGTGTCATCTCCGACATGTACAGTACAGTGAAGGCGTTTAAACCAAGCCGAGTCTGTGGGAGACGCAGATGCTAAAAGAAAACTTGAGCCACTTTCCCAGCTGCCATACCATGAAAGAGAAGCTCTCTACCGCTGTGTTTCCGAGTGCACAGTTTGCTGATAAACTCAACATACTTGCCGCTGACTTCCGACGCCGATTTGCTGACTTTGAAGCCCAAAAATTCAGGTTTGAACTGCTCAGCAATCCTTTTGGAGTTGACGTGGAAAGCGCACCACCCAACCTACAAATGGAGTTGATTGAGCTCCAGTGCAATGACACACTGAAGGAAAAATATGAGAGAGTTGGTGCTGCTGAGTTTGTACGTTTCATCCCCGACACAATGCCCCATCTGCGCATCCAAGCTGCTCAGACGCTCTCTATGTTTGGCAGCATAAACCTGTGTGAACAACTGTTCTCTTTAATAAACCTACACAAAACATCACGCAGGAGCCGTCTTTCCGACGAGCTCCTTCACTCAATCTTGAGGATTTCCTCAGCTCAGATCCTGACCCCGAACATTGATGAACTTGTACAAAAGATGAGACACCACCAACTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003425 lncRNA downstream 391678 28308463 ~ 28316501 (-) False XLOC_001276
TCONS_00002956 lncRNA downstream 957621 27744798 ~ 27750558 (-) False XLOC_001274
TCONS_00003424 lncRNA downstream 961554 27745816 ~ 27746625 (-) True XLOC_001274
TCONS_00003422 lncRNA downstream 1683335 27018666 ~ 27024844 (-) False XLOC_001271
TCONS_00003423 lncRNA downstream 1683335 27022655 ~ 27024844 (-) True XLOC_001271
TCONS_00002090 lncRNA upstream 42946 28752897 ~ 28808573 (-) True XLOC_001282
TCONS_00002097 lncRNA upstream 203638 28913589 ~ 28923849 (-) True XLOC_001285
TCONS_00002106 lncRNA upstream 457370 29167321 ~ 29168495 (-) True XLOC_001289
TCONS_00002107 lncRNA upstream 464551 29174502 ~ 29175553 (-) False XLOC_001290
TCONS_00003427 lncRNA upstream 464551 29174502 ~ 29175555 (-) False XLOC_001290
TCONS_00002085 mRNA downstream 78708 28624186 ~ 28629471 (-) True XLOC_001280
TCONS_00002084 mRNA downstream 100826 28594809 ~ 28607353 (-) True XLOC_001279
TCONS_00002082 mRNA downstream 234692 28391631 ~ 28473487 (-) False XLOC_001278
TCONS_00002083 mRNA downstream 234829 28392071 ~ 28473350 (-) True XLOC_001278
TCONS_00002077 mRNA downstream 618529 28067771 ~ 28089650 (-) False XLOC_001275
TCONS_00002087 mRNA upstream 13866 28723817 ~ 28749604 (-) False XLOC_001282
TCONS_00002088 mRNA upstream 14090 28724041 ~ 28831848 (-) False XLOC_001282
TCONS_00002091 mRNA upstream 122720 28832671 ~ 28860732 (-) False XLOC_001283
TCONS_00002092 mRNA upstream 125553 28835504 ~ 28861226 (-) False XLOC_001283
TCONS_00002094 mRNA upstream 164438 28874389 ~ 28885919 (-) False XLOC_001284
TCONS_00002081 other downstream 343581 28348958 ~ 28364598 (-) True XLOC_001277
TCONS_00002080 other downstream 399167 28308616 ~ 28309012 (-) True XLOC_001276
TCONS_00002079 other downstream 618633 28088148 ~ 28089546 (-) True XLOC_001275
TCONS_00002067 other downstream 1925661 26741744 ~ 26782518 (-) True XLOC_001269
TCONS_00002060 other downstream 2043526 26661433 ~ 26664653 (-) False XLOC_001265
TCONS_00002089 other upstream 39625 28749576 ~ 28759469 (-) False XLOC_001282
TCONS_00002093 other upstream 125908 28835859 ~ 28861136 (-) True XLOC_001283
TCONS_00002101 other upstream 348321 29058272 ~ 29061327 (-) False XLOC_001287
TCONS_00002105 other upstream 401310 29111261 ~ 29138575 (-) True XLOC_001288
TCONS_00002108 other upstream 464952 29174903 ~ 29175700 (-) False XLOC_001290

Expression Profile

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