RNA id: TCONS_00002081


Basic Information

Item Value
RNA id TCONS_00002081
length 709
RNA type processed_transcript
GC content 0.38
exon number 2
gene id XLOC_001277
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 28348958 ~ 28364598 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gctcagtaactttaaactgcgtttgaagtttatcgctttgaatttgccataaaaatgctcatttagactaacgttaaacatgtgacattacctcgagcgcaaacaagactaaaaaccaaactggaaagttttaaatgcttcaaaattcgaaacactacaccaagtcacatttaagatacactgtgtgtaaaacaaaatcggggggtatataaaacattaaagcatctaaaaacacgcttacctctgaattctgctgcactgcaggtcagTTGTTCGTAATTAATTAAGTGAAGTGCTGCGCGTGGCCGCGTGCGCCGAGTCCTCcgataccatggtaaccaaacatgttgaatattgggtgaagccatgacgttaatttaacatacagatcatgataaaaaaatgtcaacgttgatttgtacaaggatttctgtaacttttttcaaccatttatcattcaacattgtttcaacattaaagcaacaactgacgtattttcaaccacatttcaacgttgaagccttgtcatatgcaggctgtttttcaaccgttcaacattaaacgttctatcaacattatttcaatgttcaaaacacatctgaccttatttcaaccttatttcaacgttgaaggtcggtcgtCTGCCGGCTGGGGTaacaactgaatttgatgtggtGGCCTCTGGGAAATTACCAGGGCACTATTCGGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000149632

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003425 lncRNA downstream 32457 28308463 ~ 28316501 (-) False XLOC_001276
TCONS_00002956 lncRNA downstream 598400 27744798 ~ 27750558 (-) False XLOC_001274
TCONS_00003424 lncRNA downstream 602333 27745816 ~ 27746625 (-) True XLOC_001274
TCONS_00003422 lncRNA downstream 1324114 27018666 ~ 27024844 (-) False XLOC_001271
TCONS_00003423 lncRNA downstream 1324114 27022655 ~ 27024844 (-) True XLOC_001271
TCONS_00003426 lncRNA upstream 343581 28708179 ~ 28709951 (-) False XLOC_001281
TCONS_00002090 lncRNA upstream 388299 28752897 ~ 28808573 (-) True XLOC_001282
TCONS_00002097 lncRNA upstream 548991 28913589 ~ 28923849 (-) True XLOC_001285
TCONS_00002106 lncRNA upstream 802723 29167321 ~ 29168495 (-) True XLOC_001289
TCONS_00002107 lncRNA upstream 809904 29174502 ~ 29175553 (-) False XLOC_001290
TCONS_00002077 mRNA downstream 259308 28067771 ~ 28089650 (-) False XLOC_001275
TCONS_00002078 mRNA downstream 259401 28080331 ~ 28089557 (-) False XLOC_001275
TCONS_00002076 mRNA downstream 604973 27738647 ~ 27743985 (-) True XLOC_001273
TCONS_00002075 mRNA downstream 806839 27530825 ~ 27542119 (-) True XLOC_001272
TCONS_00002074 mRNA downstream 1334070 27007749 ~ 27014888 (-) True XLOC_001270
TCONS_00002082 mRNA upstream 27033 28391631 ~ 28473487 (-) False XLOC_001278
TCONS_00002083 mRNA upstream 27473 28392071 ~ 28473350 (-) True XLOC_001278
TCONS_00002084 mRNA upstream 230211 28594809 ~ 28607353 (-) True XLOC_001279
TCONS_00002085 mRNA upstream 259588 28624186 ~ 28629471 (-) True XLOC_001280
TCONS_00002087 mRNA upstream 359219 28723817 ~ 28749604 (-) False XLOC_001282
TCONS_00002080 other downstream 39946 28308616 ~ 28309012 (-) True XLOC_001276
TCONS_00002079 other downstream 259412 28088148 ~ 28089546 (-) True XLOC_001275
TCONS_00002067 other downstream 1566440 26741744 ~ 26782518 (-) True XLOC_001269
TCONS_00002060 other downstream 1684305 26661433 ~ 26664653 (-) False XLOC_001265
TCONS_00002057 other downstream 1809334 26538961 ~ 26539624 (-) True XLOC_001262
TCONS_00002086 other upstream 343643 28708241 ~ 28709951 (-) True XLOC_001281
TCONS_00002089 other upstream 384978 28749576 ~ 28759469 (-) False XLOC_001282
TCONS_00002093 other upstream 471261 28835859 ~ 28861136 (-) True XLOC_001283
TCONS_00002101 other upstream 693674 29058272 ~ 29061327 (-) False XLOC_001287
TCONS_00002105 other upstream 746663 29111261 ~ 29138575 (-) True XLOC_001288

Expression Profile

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