RNA id: TCONS_00002076


Basic Information

Item Value
RNA id TCONS_00002076
length 1660
RNA type mRNA
GC content 0.43
exon number 10
gene id XLOC_001273
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 27738647 ~ 27743985 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggttttttgaAGGAGTTTTTTTAGCCCAAGACTCCATGGTGTCTAATTTTGTTGAGGAAGTCCGTGGTGCAGTCAAGAGTACACCAGGAAAAGCAATGTGTGGGGAATCCCACTGGACAGCAGCAAGAGAGACATCAAAGCAAGCCAACAAGTTGGATGAAGAAGGTGTGGAAATTGCTGTGTGCAGGCATGGAGGTTGGGCTTGGGATTGGTCTGAACATGTATAGAGGAGAAATCTTTGCATATCCGATGTATCTCCAAAAAGAGTTCAAAGATGCAAAATTTTTGGCCATGGATGTGACCTGCCGTTATGTGCCATACCTGGAGAAAGTGTCAGAGGCCCTGAGTCATCTTCAACCTCTTCAGAAAATGAGACATTGCTTGTCTGTAATGCATGCTAAAGCCCACAATACAAAATGCGAGATTCTGTGGAATGCAAGGAACCAGGAAGGTGCTGGAACCACACTTGGGGAAGAAGTGGAGCAAGTAAATAGTTTTCTATCCAGATGTGCACTGACCACAAAATATATGACCAAGTCAGTAAGAACTGATATGCTTACGGTCCATGCAATTGGGTGGAATCAGCGTAAAGAGAATGGACTGCACATTGCCTTGTCTTCTAGATTTAAAAAGCTAGTGCAAAAGACCTTGACTGCAACAGAGAATCTGAAGATGATGCAGAATCAATTCCATTGTAGTGATGACACAGTAAAACAGTGGGTTATGGATGTCAAGCAGTGGGCAAGCAGTGGAAATGCTACAGCCAGTCCTGTTGGTGGCTTGCAGTTGTCCATTGAAACGCTCTCTGTGAGCATTTGTCAGAAAAAGCATTATCTTTATAGGCAGAATGATCGGAACAAAAGGCGTCAGAAGATTACTCAAAAGATTGCCCAAGAAAAGAAACGCTTGGTCGCAGAGATCCAGAGATACAACCAGCAACCTAACGCTGACCCTGTGGACACAAACTTAGTTGTACAGCAACTGTCCAACAAAGCAGAAGAGATCATGATCTGGCCTTGGCAGGAACAGAACACAGATGGTGTCAGCATTTTCACCAAGAAGAAGCTCTTTGACCAAGTAATGCTTGTCTCACGGCTGACTGAAGAAAGGCAGATCCTTGTAAAAGAGATGATTCAGCACTGTCAGTACCTTAAGGACTCCATAGCCAAGGTCCAGTCACTGATGGCCACTGTTTCAGTGTGGACACAAACAGGAAGCTATCCAAATGGATTCACAGAGGATGGGTCCAAGGGCCTCATGtgtttactaaaaaaaaagaCTGCAGGACCTCAGACTGAAACAGCAGACTGTAGCATGCACGTATAAAGGTATTCTTGACCCAACTTCTAGCCCGGTAGAAGAGGAGGAAGgggaaatggaggaagaaatggACTGGCAGAATGACCTTAGCTCTGAGGATaaagatgaagatgaggatgatgcAGCAGTGGGGACTCTAGTCACTTGAATTGGTGTTTTTCTTGACTAttttgtgaatgatcacattgttaCTTTTGCTATAACATGCTGATTTACACTGATGTATTTTCAGTAACTATGTTTGTAttgttactgttgtgcaaaacGTTTGGTTCTCAAATGTCTGTAAATACTTTCTTATACCTGTATAtatgaaatacaaatttaatttgtcattaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000165515

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003422 lncRNA downstream 713803 27018666 ~ 27024844 (-) False XLOC_001271
TCONS_00003423 lncRNA downstream 713803 27022655 ~ 27024844 (-) True XLOC_001271
TCONS_00002073 lncRNA downstream 737809 26994111 ~ 27000838 (-) False XLOC_001270
TCONS_00003421 lncRNA downstream 1068890 26665758 ~ 26669757 (-) True XLOC_001266
TCONS_00002061 lncRNA downstream 1075224 26662477 ~ 26663423 (-) True XLOC_001265
TCONS_00002956 lncRNA upstream 813 27744798 ~ 27750558 (-) False XLOC_001274
TCONS_00003424 lncRNA upstream 1831 27745816 ~ 27746625 (-) True XLOC_001274
TCONS_00003425 lncRNA upstream 564478 28308463 ~ 28316501 (-) False XLOC_001276
TCONS_00003426 lncRNA upstream 964194 28708179 ~ 28709951 (-) False XLOC_001281
TCONS_00002090 lncRNA upstream 1008912 28752897 ~ 28808573 (-) True XLOC_001282
TCONS_00002075 mRNA downstream 196528 27530825 ~ 27542119 (-) True XLOC_001272
TCONS_00002069 mRNA downstream 723712 26821963 ~ 27014935 (-) False XLOC_001270
TCONS_00002068 mRNA downstream 723712 26821963 ~ 27014935 (-) False XLOC_001270
TCONS_00002071 mRNA downstream 723712 26826388 ~ 27014935 (-) False XLOC_001270
TCONS_00002070 mRNA downstream 723712 26826388 ~ 27014935 (-) False XLOC_001270
TCONS_00002077 mRNA upstream 323786 28067771 ~ 28089650 (-) False XLOC_001275
TCONS_00002078 mRNA upstream 336346 28080331 ~ 28089557 (-) False XLOC_001275
TCONS_00002082 mRNA upstream 647646 28391631 ~ 28473487 (-) False XLOC_001278
TCONS_00002083 mRNA upstream 648086 28392071 ~ 28473350 (-) True XLOC_001278
TCONS_00002084 mRNA upstream 850824 28594809 ~ 28607353 (-) True XLOC_001279
TCONS_00002067 other downstream 956129 26741744 ~ 26782518 (-) True XLOC_001269
TCONS_00002060 other downstream 1073994 26661433 ~ 26664653 (-) False XLOC_001265
TCONS_00002057 other downstream 1199023 26538961 ~ 26539624 (-) True XLOC_001262
TCONS_00002054 other downstream 1299297 26438597 ~ 26439350 (-) False XLOC_001261
TCONS_00002052 other downstream 1340344 26394365 ~ 26398303 (-) False XLOC_001260
TCONS_00002079 other upstream 344163 28088148 ~ 28089546 (-) True XLOC_001275
TCONS_00002080 other upstream 564631 28308616 ~ 28309012 (-) True XLOC_001276
TCONS_00002081 other upstream 604973 28348958 ~ 28364598 (-) True XLOC_001277
TCONS_00002086 other upstream 964256 28708241 ~ 28709951 (-) True XLOC_001281
TCONS_00002089 other upstream 1005591 28749576 ~ 28759469 (-) False XLOC_001282

Expression Profile

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