Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00002100 |
| length | 1426 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 4 |
| gene id | XLOC_001287 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 29058268 ~ 29061327 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000387 | spliceosomal snRNP assembly | biological_process |
| GO:0034719 | SMN-Sm protein complex | cellular_component |
| GO:0032797 | SMN complex | cellular_component |
| GO:0003674 | molecular_function | molecular_function |
| id | description |
|---|---|
| ko03041 | Spliceosome |
| id | description |
|---|---|
| ZDB-GENE-041114-189 | Predicted to be involved in spliceosomal snRNP assembly. Predicted to be part of SMN complex. Orthologous to human GEMIN8 (gem nuclear organelle associated protein 8). |
| ensembl_id | ENSDART00000192615 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00002097 | lncRNA | downstream | 134423 | 28913589 ~ 28923849 (-) | True | XLOC_001285 |
| TCONS_00002090 | lncRNA | downstream | 249699 | 28752897 ~ 28808573 (-) | True | XLOC_001282 |
| TCONS_00003426 | lncRNA | downstream | 348321 | 28708179 ~ 28709951 (-) | False | XLOC_001281 |
| TCONS_00003425 | lncRNA | downstream | 741771 | 28308463 ~ 28316501 (-) | False | XLOC_001276 |
| TCONS_00003424 | lncRNA | downstream | 1311647 | 27745816 ~ 27746625 (-) | True | XLOC_001274 |
| TCONS_00002106 | lncRNA | upstream | 106030 | 29167321 ~ 29168495 (-) | True | XLOC_001289 |
| TCONS_00002107 | lncRNA | upstream | 113211 | 29174502 ~ 29175553 (-) | False | XLOC_001290 |
| TCONS_00003427 | lncRNA | upstream | 113211 | 29174502 ~ 29175555 (-) | False | XLOC_001290 |
| TCONS_00002957 | lncRNA | upstream | 113612 | 29174903 ~ 29175551 (-) | False | XLOC_001290 |
| TCONS_00003428 | lncRNA | upstream | 115385 | 29176676 ~ 29178308 (-) | True | XLOC_001291 |
| TCONS_00002098 | mRNA | downstream | 12846 | 28961653 ~ 29045426 (-) | True | XLOC_001286 |
| TCONS_00002096 | mRNA | downstream | 107906 | 28898945 ~ 28950366 (-) | False | XLOC_001285 |
| TCONS_00002095 | mRNA | downstream | 168244 | 28874399 ~ 28890028 (-) | True | XLOC_001284 |
| TCONS_00002094 | mRNA | downstream | 172353 | 28874389 ~ 28885919 (-) | False | XLOC_001284 |
| TCONS_00002092 | mRNA | downstream | 197046 | 28835504 ~ 28861226 (-) | False | XLOC_001283 |
| TCONS_00002103 | mRNA | upstream | 40720 | 29102011 ~ 29139183 (-) | False | XLOC_001288 |
| TCONS_00002104 | mRNA | upstream | 49907 | 29111198 ~ 29139141 (-) | False | XLOC_001288 |
| TCONS_00002111 | mRNA | upstream | 546837 | 29608128 ~ 29653472 (-) | True | XLOC_001293 |
| TCONS_00002113 | mRNA | upstream | 682151 | 29743442 ~ 29747702 (-) | False | XLOC_001295 |
| TCONS_00002114 | mRNA | upstream | 682157 | 29743448 ~ 29747702 (-) | True | XLOC_001295 |
| TCONS_00002093 | other | downstream | 197136 | 28835859 ~ 28861136 (-) | True | XLOC_001283 |
| TCONS_00002089 | other | downstream | 298803 | 28749576 ~ 28759469 (-) | False | XLOC_001282 |
| TCONS_00002086 | other | downstream | 348321 | 28708241 ~ 28709951 (-) | True | XLOC_001281 |
| TCONS_00002081 | other | downstream | 693674 | 28348958 ~ 28364598 (-) | True | XLOC_001277 |
| TCONS_00002080 | other | downstream | 749260 | 28308616 ~ 28309012 (-) | True | XLOC_001276 |
| TCONS_00002105 | other | upstream | 49970 | 29111261 ~ 29138575 (-) | True | XLOC_001288 |
| TCONS_00002108 | other | upstream | 113612 | 29174903 ~ 29175700 (-) | False | XLOC_001290 |
| TCONS_00002109 | other | upstream | 114171 | 29175462 ~ 29185227 (-) | True | XLOC_001290 |
| TCONS_00002121 | other | upstream | 1183240 | 30244531 ~ 30244645 (-) | True | XLOC_001298 |
| TCONS_00002134 | other | upstream | 1527952 | 30589243 ~ 30612490 (-) | False | XLOC_001304 |
