RNA id: TCONS_00003417


Basic Information

Item Value
RNA id TCONS_00003417
length 2563
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id XLOC_001242
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25555725 ~ 25558287 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACAAGTATAATTTGgcctttaccaatttatttaataaaagaaagaatctaTCATCTCTAAATTGTGGTAAAGAGGCACAACAAGCTGTCTTCTTTGTCCAATATTATGTCAGTCAGGATGGTAATGGTAAAACTCAAGGATTACCTTGCACCTTCTCAGAAATTTACCATTGATCATATGTATTACAAGTGGctggattgtttttaacacaagcaacgttttttaaatcattatcttaAACAGATTAAGGCTCATTTTGGACTACACTTACATTACTTTACAACTGCTTAATGCAGTACTGATGCATCTAGTAGTTAGTGGGTTTAACTaatgtcacatctgtttttattcattttagatgcagaaacttttgacatatgaattcatcttgactaagggtaaggtttttgttcagaattaatcattatttaaaatcattgtattttctttgttattatgtacagattttaaaagaatgtactttcttttaataaagaactCTTCACAGCACTTCATCTGAACAGTCACAACCTCACAGAGCTGCTCAACTGCCCCTCTCAGATCAGTGTTGAAGCTGGAACCTCATCTTGTGTACAGCAAAGGCAGAGCTGAAAATTCACTGTTTGTCTTGTATTGTGTGGTAAgtcatagttttattaattttaatttcattgcaaCACTAAGTAGTCCATTCTGTGGCCAATATGATATAAAAGGCCTAAAATGGGACTAACGTGattattgttttgatttcttGAAATACTTATGgggctacacatgcagctgaTGTTAGCTACATGGAGTAGGACATTTCTTTCAgtatactcttaaagagattcacccaaaaatgaaaatactgtcattAATGACTCatacttcacttgttccaaatatgtctgagttgctttcttcagttaaacacaatttatattttaaagaaagatgaaaacctgcaaacattaacttccatggtatttgttttttcctactatgcatgtcaatgttttcagcttttcagctttcttcaaaaacttccttcatgttcaacacaaagtaacttggaagtttttaaaaaaggtttacaaccacttaaaggagagtaaatagtgaactaTTCCTATAACCCaatctagttgactttactagaaaattgtatagaaacccagtgccttaaaccccttacattttatacagggtacaacttaacagccatacttgaattaaaatattactgtaagtccaagaagattgtaaaggttctaggttaatttaaagaaggctgtttagtttcaccttgtgtaaaaacataaaggGTTTAAGGCAACATTTtccatgcagtttttttttttataaagtcaacTAGTTTGAGTTAAGAATGTAATGGGTTTCAGTAAAAGCAGTGAATCATGCAGGCATGAAATTAATGTTTAGCCTTGTAAAACAATAAGCTTgttataatttagaaatatttttagggTGGAGCACAGTATGCTGTAGTAGTTTTCATATAATTGATGAGTCAAACATgagatgtgtgttttaaattgcaagaagtgaattaacaatatgttcatcaagattcaaatcTTGCATCTTATATTTAAGATTTTGGCCCAATAATACCCATATtcggctatttaaaaaaaaaaaaacttgctggaatttGTGTCAGCATTCCCTTCAATGAAAACTACAGCAGTGGACTTCagtggtgataaaaatgtatgaGAAGGATAAGGGTGTTCATAATGAGAAGTGCAGTCACTATCCTGATCTCTGAGTTTGTAGAACTGACAGATCTGCTTGGAATACATGGAAACATGCTGGGAATGTTTAACCTATTATACAGTTAATTAAAGAGTGCCAGGTTTAATGacactttacatatataaataaatatcactgaactttctaaatgaaacctaacactcattctttgttcagtaatgatattgtgcacttttaatactttacagtggcaaaacctggaataacacatgggagccctccaggaattgctgacactttacgcccaagtctcctcatgctaaccggattgcaatatgacagtctagtcaGCATAAACACCTGGACTCGCCAAGCACACTTTGGTTCTTAGTGTTTTGTACAAATTGTTTTTGCTATTCTTCAGtaaatacttgaatatgttttgaacttattctacttttgatgtttaagttcagaaagttgttattataaacataatttgcattggtcatgaacttgacttcttgttgttgtgaaagctgtttattataatggcatttccaaaggcattatttgaaaagattttttgcagtgcagttttacttgagcttgacataccagatgtatgacatgaataaatatcacaaaataaatataataatgataatacaaaatataaatttccttcaattataattgtttttaatcatttatatatgtatggtaatatattattgcattaaaaactgttataaatatatatatttttggtttttgcatgtttgcgtgattttttttttttgtggcattataaataaattataaatgtttcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002008 lncRNA downstream 69306 25478767 ~ 25486419 (-) True XLOC_001240
TCONS_00002952 lncRNA downstream 411343 25143964 ~ 25144382 (-) True XLOC_001236
TCONS_00002951 lncRNA downstream 531222 24967346 ~ 25024503 (-) False XLOC_001236
TCONS_00002950 lncRNA downstream 948963 24604431 ~ 24606762 (-) True XLOC_001234
TCONS_00003416 lncRNA downstream 949919 24602559 ~ 24605806 (-) False XLOC_001234
TCONS_00002014 lncRNA upstream 114155 25672442 ~ 25676099 (-) False XLOC_001244
TCONS_00003418 lncRNA upstream 151025 25709312 ~ 25714494 (-) False XLOC_001245
TCONS_00002019 lncRNA upstream 304679 25862966 ~ 25863639 (-) True XLOC_001247
TCONS_00003420 lncRNA upstream 625112 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00003419 lncRNA upstream 625112 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00002009 mRNA downstream 59592 25491324 ~ 25496133 (-) True XLOC_001241
TCONS_00002005 mRNA downstream 69154 25442699 ~ 25486571 (-) False XLOC_001240
TCONS_00002006 mRNA downstream 69198 25442716 ~ 25486527 (-) False XLOC_001240
TCONS_00002007 mRNA downstream 69254 25446510 ~ 25486471 (-) False XLOC_001240
TCONS_00002004 mRNA downstream 116791 25401342 ~ 25438934 (-) True XLOC_001239
TCONS_00002011 mRNA upstream 66471 25624758 ~ 25648568 (-) True XLOC_001243
TCONS_00002012 mRNA upstream 111512 25669799 ~ 25679383 (-) False XLOC_001244
TCONS_00002013 mRNA upstream 111521 25669808 ~ 25679339 (-) False XLOC_001244
TCONS_00002017 mRNA upstream 179480 25737767 ~ 25749888 (-) False XLOC_001246
TCONS_00002018 mRNA upstream 179493 25737780 ~ 25749657 (-) True XLOC_001246
TCONS_00001997 other downstream 730462 24825147 ~ 24825263 (-) True XLOC_001235
TCONS_00001977 other downstream 2214035 23340971 ~ 23341690 (-) False XLOC_001223
TCONS_00001976 other downstream 2215222 23339964 ~ 23340503 (-) False XLOC_001223
TCONS_00001973 other downstream 2225659 23323002 ~ 23330066 (-) False XLOC_001223
TCONS_00001939 other downstream 2881112 22663723 ~ 22674613 (-) True XLOC_001211
TCONS_00002015 other upstream 117410 25675697 ~ 25676340 (-) True XLOC_001244
TCONS_00002016 other upstream 151526 25709813 ~ 25711803 (-) True XLOC_001245
TCONS_00002024 other upstream 359987 25918274 ~ 25936641 (-) True XLOC_001249
TCONS_00002039 other upstream 493194 26051481 ~ 26063159 (-) True XLOC_001254
TCONS_00002042 other upstream 625452 26183739 ~ 26185594 (-) True XLOC_001256

Expression Profile

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