RNA id: TCONS_00002013


Basic Information

Item Value
RNA id TCONS_00002013
length 1575
RNA type mRNA
GC content 0.45
exon number 9
gene id XLOC_001244
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25669799 ~ 25679383 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCACAATCTCAAGGGTACACCACACAGGTCCGACATGGGCTCGATCATGCATGTGGTTGCTTCCATTGTGCTGCTGTGCACATTAACATCAGCGcaaagAGGAGACTACTCACCATCACATGATTTGTGCAACCCTAATGATGGGTTTGGAACATACTGTCCAACAACATGTGGAGTCGCTGATTACTTGCAGAGGTACAAGCCTGATATGGACAAAAAGCTGGATGATATGGAACAGGATTTGGAAGAGATCGCCAACCTCACCAGAGGAGCTCAAGACAAAGTGGTCTACCTGAAAGATTCAGAAGCACAAGCACAAAAACAATCACCAGATACTTACATAAAAAAGTCTTCAAATATGCTGGATGATATACTACGATTTGAGAAGAGCATTCTCGCTCAGGAAGAACAAATATATCAACTGCAGTCAGTCCTTCAAGCTAACGAGAAAAAAATAACGGATTTAAAGCAGATGTCTATGCAGCTGGACCAAATGTGCAAAGAGCCCTGCAAAGACACTGTGGAGATTCAGACAGTCACTGGCAAAGATTGTCAGGACATTGCAAACAAAGGTGGTAAGGTCAGCGGGCTGTATTATGTGAAACCAGCCAGAGCCCCTGAAGCGTTCCTGGTCTACTGTGAAATCGACAGCTTTGGACGTGGATGGACTGTACTTCAGAGGAGGCGGGATGGCAGCGTTGACTTCAGCAAAAACTGGATCCAGTATAAGGAAGGCTTTGGTTACCTCTCACCCGATGACAGGACTGAGTTCTGGTTGGGAAATGAGAAGATACATCTGCTGTCAGTTCAGTCCAGCGTGCCTTATGTGCTGAGGATAGAGATGGTCGATTGGGAAGGCAACAAAAAGATATGCAGACTATGCCACTTTCAAACTTGGACCAGAAGTTGATGCTTACCGCTTGACATACGCTTATTACTTTGGCGGAGATGCTGGCGATGCCTTTGATGGTTACGACTTTGGTGACGATCCCAGTGATAAATTCTACACGTCTCACAATGGCATGCAGTTCAGTACAGTTGACAGAGACAACGACAAGTTCCAGGGACACTGTGCTCAGCAGGATGGGTCTGGTTGGTGGATGAACCGCTGCCATGCTGCTCACCTCAATGGAAAATACTATCAGGGTGGCAAATACACAGAGAAGGACGCAGAGTCCGGATATGACAACGGCATCATCTGGGCCACATGGCACAGTCGCTGGTATTCTCTGAAGGAAACCACCATGAAGATCATTCCCATCAACAGAATTGGTGCCACTGGAGGCCAAGAAAGTGGTTCCAAGCAGTTCGGAGGTATTGGAGACATTTAAACAACTTGCCTGAAGATTGTCCTGTTCTGAGCTATCATTCTGTTTTTGTGACACTAATGTTGAAAGGCATGGGATGTGGGCAAGGTAAACGTCTGTCTGATATTTCTCATTTTACACAAATTAAGTCAGTAAAAGATTCATACGCAAGTCCCGATGGTCATGTTTTTAAATTTGATCAACTCAATTCAAATTCAACTGTTCTAGCATTGCATCTGTCAATAAATAAAGTTCTCTGTCTTTTG

Function

GO:

id name namespace
GO:0070527 platelet aggregation biological_process
GO:0072378 blood coagulation, fibrin clot formation biological_process
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0051258 protein polymerization biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005577 fibrinogen complex cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04611 Platelet activation
ko04613 Neutrophil extracellular trap formation
ko05171 Coronavirus disease - COVID-19
ko05150 Staphylococcus aureus infection
ko04147 Exosome
ko00536 Glycosaminoglycan binding proteins

ZFIN:

id description
ZDB-GENE-040426-1998 Predicted to enable signaling receptor binding activity. Acts upstream of or within blood coagulation, fibrin clot formation. Predicted to be located in extracellular region. Predicted to be part of fibrinogen complex. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in congenital afibrinogenemia and multiple myeloma. Orthologous to human FGG (fibrinogen gamma chain).

Ensembl:

ensembl_id ENSDART00000161703

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003417 lncRNA downstream 111521 25555725 ~ 25558287 (-) True XLOC_001242
TCONS_00002008 lncRNA downstream 183389 25478767 ~ 25486419 (-) True XLOC_001240
TCONS_00002952 lncRNA downstream 525426 25143964 ~ 25144382 (-) True XLOC_001236
TCONS_00002951 lncRNA downstream 645305 24967346 ~ 25024503 (-) False XLOC_001236
TCONS_00002950 lncRNA downstream 1063046 24604431 ~ 24606762 (-) True XLOC_001234
TCONS_00003418 lncRNA upstream 29973 25709312 ~ 25714494 (-) False XLOC_001245
TCONS_00002019 lncRNA upstream 183627 25862966 ~ 25863639 (-) True XLOC_001247
TCONS_00003420 lncRNA upstream 504060 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00003419 lncRNA upstream 504060 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00002953 lncRNA upstream 564166 26243505 ~ 26248287 (-) True XLOC_001257
TCONS_00002011 mRNA downstream 21240 25624758 ~ 25648568 (-) True XLOC_001243
TCONS_00002009 mRNA downstream 173675 25491324 ~ 25496133 (-) True XLOC_001241
TCONS_00002005 mRNA downstream 183237 25442699 ~ 25486571 (-) False XLOC_001240
TCONS_00002017 mRNA upstream 58428 25737767 ~ 25749888 (-) False XLOC_001246
TCONS_00002018 mRNA upstream 58441 25737780 ~ 25749657 (-) True XLOC_001246
TCONS_00002020 mRNA upstream 207098 25886437 ~ 25911292 (-) False XLOC_001248
TCONS_00002021 mRNA upstream 217892 25897231 ~ 25911901 (-) True XLOC_001248
TCONS_00002022 mRNA upstream 238252 25917591 ~ 25936679 (-) False XLOC_001249
TCONS_00002010 other downstream 111878 25555725 ~ 25557930 (-) False XLOC_001242
TCONS_00001997 other downstream 844545 24825147 ~ 24825263 (-) True XLOC_001235
TCONS_00001977 other downstream 2328118 23340971 ~ 23341690 (-) False XLOC_001223
TCONS_00001976 other downstream 2329305 23339964 ~ 23340503 (-) False XLOC_001223
TCONS_00001973 other downstream 2339742 23323002 ~ 23330066 (-) False XLOC_001223
TCONS_00002016 other upstream 30474 25709813 ~ 25711803 (-) True XLOC_001245
TCONS_00002024 other upstream 238935 25918274 ~ 25936641 (-) True XLOC_001249
TCONS_00002039 other upstream 372142 26051481 ~ 26063159 (-) True XLOC_001254
TCONS_00002042 other upstream 504400 26183739 ~ 26185594 (-) True XLOC_001256
TCONS_00002044 other upstream 573569 26252908 ~ 26294703 (-) False XLOC_001258

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_10370185_10373703.mRNA True 1597 mRNA 0.45 9 CI01000300 10369923 ~ 10373742 (-)