RNA id: CI01000300_10370185_10373703.mRNA


Basic Information

Item Value
RNA id CI01000300_10370185_10373703.mRNA
length 1597
RNA type mRNA
GC content 0.45
exon number 9
gene id CI01000300_10370185_10373703
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 10369923 ~ 10373742 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAATCTCAAGGGTACACCACACAGATTGCAGGTCCAACATGGCCTCGTTCATGCATGTGGTTTCTTCCATCCTGCTGCTCTCCACATTAACATCAGCGCAAATGAGAGGGGACTATTCACCGTCGCAAGATATATGTAACCCAAACGATGGGTTTGGGATATACTGCCCTACCACATGTGGAGTTGCTGATTACCTACAGAGGTACCAGCCTGAAATGGACAGACAGCTGAATGAAATGGAACAGGATTTGCAGGAGATCGCCAACCTTACCAGAGGAGCACAGGACAAAGTGGTCTACCTGAGAGACTCAGAAACACAAGCACAAAAACAAGCACCAGATACATACATCAAAAAATCTTCAAGCATGCTGGATGATATACTGCGATTTGAGAAGAGCATTCTCGCTCAGGAAGATCAAATATATCAACTGCAGTCAATCCTACAGGCTAACGAGAAACGAATAACTGATTTAAAGCAGATGTCTCTCCAGCTGGACCAGTTGTGCAAAGAGCCCTGCAAAGACACTGTGGAGATTCAGACATTCACAGGCAAAGATTGTCAGGACATTGCAAACAAAGGTGGTAAGGTCAGTGGGCTCTACTATGTAAAACCAGCCAGGGCTCCTGAGGCGTTCCTGGTCTACTGTGAGATAGACAGCTTTGGACGTGGATGGACTGTACTTCAGAGGAGACGGGATGGCAGCGTTGACTTCAACAAACAGTGGATTCAGTATAAGGAAGGCTTTGGGTACCTCTCACCAGATGACAGAACAGAGTTCTGGCTAGGAAATGAGAAGATACATCTGCTGTCGGTTCAGTCCAGCGTGCCTTATGTGCTAAGGATAGAGATGGTCGATTGGGACGGCAACAAAAAGTATGCCGACTACGCCACTTTCAAACTTGGACCAGAAATTGATGCCTACCGCTTGACGTACGCTTATTTCTTTGGTGGAGATGCTGGTGATGCCTTTGATGGTTATGACTTTGGCGACGATCCCAGTGACAAATTCTACACATCTCACAATGGCATGCAGTTCAGTACACCTGACAAAGACAACGACAAGTTCGTGGAACACTGTGCCTTGCAGGAAGGGTCCGGCTGGTGGATGAACCGCTGCCATGCTGCTCATCTCAATGGAAAATACTATCAAGGTGGCAAGTACACAGAGAAGGACACACAGCATGGATATGACAACGGTATCATCTGGGCCACGTGGCACAGTCGCTGGTATTCTCTGAAGGAGACCACCATGAAGATCATTCCCATCAACAGAATCGCTACTGGAGGGCAGGAAAGCGGTGCCAAGCAATTTGGAGGCCTGGGAGACATTTAAAGACCTTACCAAAGCTCTCCCCATTGTTCTGAGCTTTCATTTTATTTTTGTGTAACAATTGTTGAAATACATGGAAATGACATTGGCCAGGCATTTTCAAGTTAGGGTAAACATGTCTATTGGTGTCTGATATTTTCTATTATTCAAAAATTAGGTCTGCAAAAGCTTCATACACAAGTCATGTTGGTCATGTTTTTAAATTTGAACAACTCATTTAAAATGTAATGGCCTAATGCATCGCATGTGTCAATGAATTAATAAA

Function

GO:

id name namespace
GO:0051258 protein polymerization biological_process

KEGG:

id description
K03905 FGG; fibrinogen gamma chain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476322 lncRNA downstream 27234 10342467 ~ 10342689 (-) True G414730
TU476315 lncRNA downstream 75493 10294185 ~ 10294430 (-) True G414723
TU476314 lncRNA downstream 77425 10292159 ~ 10292498 (-) True G414722
TU476311 lncRNA downstream 80360 10289099 ~ 10289563 (-) True G414719
TU476170 lncRNA downstream 194775 10170685 ~ 10175148 (-) True G414587
TU476330 lncRNA upstream 8109 10381851 ~ 10382206 (-) True G414738
TU476352 lncRNA upstream 33618 10407360 ~ 10407713 (-) True G414757
TU476353 lncRNA upstream 54952 10428694 ~ 10429137 (-) True G414758
TU476354 lncRNA upstream 56054 10429796 ~ 10430161 (-) True G414759
TU476359 lncRNA upstream 76914 10450656 ~ 10452540 (-) True G414764
CI01000300_10313545_10352632.mRNA mRNA downstream 16407 10313282 ~ 10353516 (-) True CI01000300_10313545_10352632
CI01000300_10273821_10275599.mRNA mRNA downstream 92428 10273449 ~ 10277495 (-) True CI01000300_10273821_10275599
CI01000300_10252331_10267292.mRNA mRNA downstream 102224 10252331 ~ 10267699 (-) True CI01000300_10252331_10267292
CI01000300_10221037_10234396.mRNA mRNA downstream 135527 10220518 ~ 10234396 (-) True CI01000300_10221037_10234396
CI01000300_10176172_10189470.mRNA mRNA downstream 180034 10175937 ~ 10189889 (-) True CI01000300_10176172_10189470
CI01000300_10408955_10421392.mRNA mRNA upstream 35077 10408819 ~ 10421392 (-) True CI01000300_10408955_10421392
CI01000300_10501568_10527998.mRNA mRNA upstream 127296 10501038 ~ 10529291 (-) True CI01000300_10501568_10527998
CI01000300_10534320_10539931.mRNA mRNA upstream 159652 10533394 ~ 10539987 (-) True CI01000300_10534320_10539931
CI01000300_10550389_10552830.mRNA mRNA upstream 176309 10550051 ~ 10555244 (-) True CI01000300_10550389_10552830
CI01000300_10591932_10594068.mRNA mRNA upstream 216642 10590384 ~ 10594068 (-) True CI01000300_10591932_10594068
TU476061 other downstream 709118 9658049 ~ 9660805 (-) False G414498
TU476052 other downstream 709118 9658987 ~ 9660805 (-) False G414498
TU475129 other downstream 1393923 8969448 ~ 8976000 (-) True G413664
TU474529 other downstream 2223034 8146532 ~ 8146889 (-) True G413140
TU474008 other downstream 3679590 6652998 ~ 6690333 (-) True G412681
TU476415 other upstream 322269 10696011 ~ 10700634 (-) True CI01000300_10698449_10700497
TU476450 other upstream 332258 10706000 ~ 10706323 (-) False G414829

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00002013 False 1575 mRNA 0.45 9 NC_007112.7 25669808 ~ 25679339 (-)