RNA id: TU476322


Basic Information

Item Value
RNA id TU476322
length 223
lncRNA type intronic
GC content 0.22
exon number 1
gene id G414730
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 10342467 ~ 10342689 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTAAGCTATTAATGTTAATGTTAAGAAATGCATTAATATATGTACAGGTTAACATTAACAAAGATTACATTAACATTAATTAATGCTGTAAACAGATCTTGTTTATTATTGGTTTGTGTTAACTAATGCATTAAATAATGTTAACAATTTAAGCTATTAATGTTAAGAAATGTATATGTACAAGTTAAAATTAAGAAAGATTAACTAATGCTGTATACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU476315 lncRNA downstream 48037 10294185 ~ 10294430 (-) True G414723
TU476314 lncRNA downstream 49969 10292159 ~ 10292498 (-) True G414722
TU476311 lncRNA downstream 52904 10289099 ~ 10289563 (-) True G414719
TU476170 lncRNA downstream 167319 10170685 ~ 10175148 (-) True G414587
TU476178 lncRNA downstream 185064 10151951 ~ 10157403 (-) True G414592
TU476330 lncRNA upstream 39162 10381851 ~ 10382206 (-) True G414738
TU476352 lncRNA upstream 64671 10407360 ~ 10407713 (-) True G414757
TU476353 lncRNA upstream 86005 10428694 ~ 10429137 (-) True G414758
TU476354 lncRNA upstream 87107 10429796 ~ 10430161 (-) True G414759
TU476359 lncRNA upstream 107967 10450656 ~ 10452540 (-) True G414764
CI01000300_10273821_10275599.mRNA mRNA downstream 64972 10273449 ~ 10277495 (-) True CI01000300_10273821_10275599
CI01000300_10252331_10267292.mRNA mRNA downstream 74768 10252331 ~ 10267699 (-) True CI01000300_10252331_10267292
CI01000300_10221037_10234396.mRNA mRNA downstream 108071 10220518 ~ 10234396 (-) True CI01000300_10221037_10234396
CI01000300_10176172_10189470.mRNA mRNA downstream 152578 10175937 ~ 10189889 (-) True CI01000300_10176172_10189470
CI01000300_10082094_10086801.mRNA mRNA downstream 255447 10081975 ~ 10087020 (-) True CI01000300_10082094_10086801
CI01000300_10370185_10373703.mRNA mRNA upstream 27234 10369923 ~ 10373742 (-) True CI01000300_10370185_10373703
CI01000300_10408955_10421392.mRNA mRNA upstream 66130 10408819 ~ 10421392 (-) True CI01000300_10408955_10421392
CI01000300_10501568_10527998.mRNA mRNA upstream 158349 10501038 ~ 10529291 (-) True CI01000300_10501568_10527998
CI01000300_10534320_10539931.mRNA mRNA upstream 190705 10533394 ~ 10539987 (-) True CI01000300_10534320_10539931
CI01000300_10550389_10552830.mRNA mRNA upstream 207362 10550051 ~ 10555244 (-) True CI01000300_10550389_10552830
TU476061 other downstream 681662 9658049 ~ 9660805 (-) False G414498
TU476052 other downstream 681662 9658987 ~ 9660805 (-) False G414498
TU475129 other downstream 1366467 8969448 ~ 8976000 (-) True G413664
TU474529 other downstream 2195578 8146532 ~ 8146889 (-) True G413140
TU474008 other downstream 3652134 6652998 ~ 6690333 (-) True G412681
TU476415 other upstream 353322 10696011 ~ 10700634 (-) True CI01000300_10698449_10700497
TU476450 other upstream 363311 10706000 ~ 10706323 (-) False G414829

Expression Profile