CI01000300_10501568_10527998 (USP53B)


Basic Information

Item Value
gene id CI01000300_10501568_10527998
gene name USP53B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 10501038 ~ 10529291 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_10501568_10527998.mRNA
AAGTCCAGTAATGGATCAGTTTAATTATAAACAGATGTCAAGTCCATATCATGTACTTTTTTAAAGTAGCTGCTTACAGCTACATTTTAGTTTTGTTCTTGGCAGCCTATCTTGTTTTCGGCAGTACTCTTTTATTGGTTGCTTACCAAAGACCATTAGAGTAGCTATTTTGATATTTTATCTTGCCATTGTCATTGTGCCTCTCAACACTGAAGTGAATACCAGAGATAATGTCTAATAAAATGTTTGGACTTGGCCTGGATATTCTTTCTAAGCTCAACCAGTAAAAAGTTAAGCAGTCAGGAACTATTTTAGGCCCTAAGATCATAGGGTATACCAAACAAATCTCATGCGAAAAATGTTACTGTTTTATGTTTTGGTGACTTTGTATGATTTGATACATAAAGTTCACCATAACCCCATCCCTAAACCCGTCAGTGGGCCATAAGCAGGTTGTAGGAATTCCCCACAAATTCGCCCAAATATAAAATTACCATGAGAGCATGTTGTGTAAACTTTCAAGAATTTAGAAGACTTTGTTGTGGCATAGAGTTTTTTAAAAGAACAAACCATCCTGTCATGAAATGCAGTTGATAACTGCTGAGTATGATCTGAAACCAAATATGTGGCTCCTAATTGTAATAACACCAGAGTTCAGTAAAATGACTATACTGTAGTAATCTGAAGTAGCTTTCTATTTAACAACATTTTTTTTCCCCTATTACTTACCTCCTGTACCCCCAACCCTTCTTTGTGTCTCTTCCTCTCTGTAGGTCTTCCTTTGTTAGCCAGTGTTCTTCTTCAGTGCCTGTCCTGAGGAGCCTTTATGAATGACCCCCTTCAGTGACCTCCATTGACTTTGCTGGAAATGCTGAGGAGAGTAATGGATTTGTTCTTCTATCTGCATCCATCCTCTTATTGCCAGTGTGCCTGGATGCAGATGACTCCTCACATACAGAGGAGACAGAGTGTGATCATTGTCATAGTAACTGCTGGACTGATAAAGCAACGTGCTGCAACTTGTGGCTAAAAGTCACATTATCACATTAATTGAAGAGCTACTGTTTTGAATGATTCCTTATATCCCAATGGTGTGCTGTCAAATCCTGCACATCGGAAAAAAAAAATCCAGTGCAGTATATTTTGCTATTTTTGTAGGGCACTGTGAAGTTGGCCTTCTCTGTCAGGTACAGGGACTGCGGTACTAATGTTGCCTAAAACAAATGCATCAACCTCAAGTTGCTTCAATAATTGACTCTGGTTGCTTGCTGGAGAGGGCCAGGCTCCAACCTCATGGCATGGGTCAAACTTTTTAAAAAGCCTGGAGGCAACATGGCTGGTACAGGTACCTTGAGTGGAACAGGGCTGGGCAAGTCCTACCAGCCGGGCAGTATGATCTCTCTCGCTTTGACCAAAGGTCTTCTTAATGAGCCAGGCCAGAACAGCTGCTTCCTTAACAGTGCTGTGCAGGTTCTTTGGCAGCTTGACATCTTCAGGAGGAGTCTACGACACCTATCTGGCCATTTCTGCTTGGGCGATGCCTGTATTTTCTGCGCTTTAAAGAGCATCTTCTGTCAGTTCCAGCAGAGTCGAGAGCGGGCTCTGCCGTCAGACACCCTGCGTCACGCTCTGGCCGAGACCTTTAAAGATGAGCAGCGCTTCCAGCTGGGCCTCATGGATGATGCAGCAGAGTGTTTTTTTGTTTGTCGTAGTTGTGGAGCATCATCAGACCCACTCCCTTTCACTGAGCTTGTGCACTATGTGTCCTCCACAGCCCTCTGTCAACAAGTGGAGCGAATCTTGGAGAAGACAGACAGACTGCGCTCAGACATGTTTGGTGAACTGCTGCAGGCAGCCAACACCATTGGAGATCACCGCAACTGCCCTAGTAACTGTGGGCAGAGTATCAAAATCCGACGTGTGCTGATGAACTGCCCAGAGATCGTCACCATTGGCTTTGTGTGGGACGCTGAACAGTCTGACCTCACTGAAGATGTCATCCGCTCTTTGGGCCCAAACCTCAATCTTTCGGGGCTGTTTTATAGAGTCACTGATGAAAATGCCAAGAAAAGAGATCTCCACCTGGTGGGAATGATCTGTTACTCTAGTCGACATTACCTAGCATTCGCTTTTCACAGCAAGTCTTCCAAATGGATCTTTTTTGATGATGCAACCGTGAAAGAGATTGGCTCCAAGTGGAAAGATGTGGCATCTAAATGTATCCGAGGTCACTTCCAGCCACTCCTCTTGTTCTATGCCAACCCGGATGGTACCGCAGTGTCTAATGAGGACGCCCCCAGACAGACCACCATGTGGTCCCGTTATAACTCCCCCCTCAATGGGAAAGGGACAGACACTCAGCTGTCAAGCTCTAAGAAACTAGACAGTGTGAGAGATAGTTTTGATACAATTTCTCCCTTTCCAATGTCCCAGTTAAAGTGCTTCCAGAAAGTCCCAGCAGGTTCCGAGAGTCTTCCAGAGATTTTTCTCACCGAGGAGGACAGAGGAGAGAGAGTGAAAGAAGCTACCGAAGATCAGACTCTCTCCAGCACAAAGGAGTCACGCTCAAACCAGGGAATGGCCACTGGCACCAGTCGTCACATTGAATCATCATCCCTCTGCCATCGTGGGTCCACAAATGTCCCAGAGCGTGGCAAGTCCAAGCCCTCATGGAGACCAGTGCGAGAGGTCCTGAATGTAGACAGTGTGCTGAGCGAACTAGAACAACGTCAGCAGCAGCAGCAGCAGCGTGGGAGCCCTCGATGTGTCCGTCGATTTGACCATGAGAGAGGGCTGATGAAGGAGAAACAAAAAGGTCTGATGACTATTTACGAAGATGACTCACGATTGGAGACTGAAAGTCAAAGCTCCCAGGAGTCTCAGCGACAGATGATGGTGACCAGACCTAAAGGTGGAGCAAATATAGCACAGCGGAGTGATAATTGGATGATCCAGAGGACAGAGTCAGGATATGAGAGCAGTGATAGGTTGAGTAGTGGTTCCACCAATCCTGACTCACCAGGTGTTGAGAACTTCACAGGCAAAGAGCTCAGACTCAGTCAAGAAGCACAGCACCTCAGGGATCAAGGCCATAATAATCAAGGTGACTCAAAAATGGAGGCAGTGCGTTCTCCGCTGTATCACAGTAAACATTTGGTTAAAATTCAGGGAAAGAACTCAGAACATCTCATGAAAGGCAGCCCAAGTTCAAGGAAAGGGGGCAACACAGAGAAAGACCCATCGGCCGGTGACCTTCAAGCAGAGCAACAGGAAGTTTCCATGCGTTGGCACCACAGCCCAGAAAGCCCCCTTCTGCGCCGCCTGGGCAAGATCAGCAGTTCAGAGTGTAACAGTTCTGATGAACTCACTAACCCTCTTTCAGAGCAGGAAGACAGTGCTTATCGTTCTAGCACCAGTGAAGTCGCTCCACACGAATCACCGGGTCCTAATCGCACCATTTACCCTTTGCAGCCGAGGGAAGAGTCAGTAATAGCTCCATCAATGCCAGCTCACTCCAAACACGCACAGCGACCGATTGAGATAAAGACTCCATCCTTCCGTCCCAGAATTTTACAGGAGCCATCACAGACAGCATCCAGAGCATCCGGTCGTGGTATTTCATCATTGCACACCACCGCAGTACACAAAAGAATGGAAATCAACGGCACATGCCCAAGCTCATCAGATGTGAGCTCAAAATCATGTTCTGACCAGGAAAGAGGGGAGCAGGTGTCCAGCGAGCCTGAGGAAAGATCTTGTGGGTGGGATAAGCCATCTGCTTCAGTGTCTCCAGGATCAGGAGTAGCGCTGACCACTTATTTCTCTGTGGATAATTGTATGACAGACACCTACAGACTAAAGTATCACCACCAGAGGCCGTTGGTCCTCTCCATGCCTGAGCCAAGAGGAGCTGTTAAGGATGGGAGAGACACGGGACACTCAAGCCGCATAGAGAACCAATCTGAGCGTGCCAAAACTAAGCCTGACTCTGGCAATAGCATCAATAAGCCCACTGCTAAATGGCACCCTGTGACTTCAAAAGGGCTTGATGAACATGGATATTTGTGAAAGTTATGGTAAGTTCTCACTAAACCTTGAGATATTGTTGTAAATTTAAAAGTTTAAAAAGTACAATTCTTTAAGTAATAATATTGCACATTGCACAGATATCTTTTCAACTTAGAAGTTTAAAAAGTACAAGACTCCGATGTTTAATGACAAAATAAACGTATAAAATTCACACACTACATGGATGAGTACATAGTGCATAAGTACATAGTGTATAAGTGCTTAGTGTATAGTGCTCCATTTGGGACGCAGCTAATGCTTTGATAGCATTAACATAACATAGCAATTGCTAAATGAGTACAGCATTTCACACACCTAGTCTCAAACAAAGCTCATGATCCAGTTATTAAAAGAAACAAGTTCATAAAACTATAACACTTCAGATTACTTGAAATGTGTCAGTTTTGTAAACTCAAGAGAAAAGTTCTAAATATGCATAAAAGTTAATTTGATTTAACTAATTTGTTTAAGTTTACCCTACACAAACCAATGAATTATTTTGAGCATTAGGGTTTACAGTTTAAAATAAA

Function

symbol description
usp53b Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in response to auditory stimulus and sensory perception of sound. Predicted to act upstream of or within protein deubiquitination. Predicted to be active in cell-cell junction. Orthologous to human USP53 (ubiquitin specific peptidase 53).

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_10501568_10527998.mRNA True 4598 mRNA 0.45 15 10501038 10529291

Neighbor

gene id symbol gene type direction distance location
CI01000300_10408955_10421392 NA coding downstream 79646 10408819 ~ 10421392 (-)
CI01000300_10370185_10373703 FGG coding downstream 127296 10369923 ~ 10373742 (-)
CI01000300_10313545_10352632 DCHS2 coding downstream 147522 10313282 ~ 10353516 (-)
CI01000300_10273821_10275599 SFRP2 coding downstream 223543 10273449 ~ 10277495 (-)
CI01000300_10252331_10267292 ARFIP1 coding downstream 233339 10252331 ~ 10267699 (-)
CI01000300_10534320_10539931 MYOZ2, MYOZ2B coding upstream 4103 10533394 ~ 10539987 (-)
CI01000300_10550389_10552830 NA coding upstream 20760 10550051 ~ 10555244 (-)
CI01000300_10591932_10594068 NA coding upstream 61093 10590384 ~ 10594068 (-)
CI01000300_10599691_10601222 NA coding upstream 69918 10599209 ~ 10601222 (-)
CI01000300_10614813_10616496 NA coding upstream 85517 10614808 ~ 10616496 (-)
G414766 NA non-coding downstream 1967 10496113 ~ 10499071 (-)
G414775 NA non-coding downstream 39042 10460920 ~ 10461996 (-)
G414764 NA non-coding downstream 48498 10450656 ~ 10452540 (-)
G414759 NA non-coding downstream 70877 10429796 ~ 10430161 (-)
G414758 NA non-coding downstream 71901 10428694 ~ 10429137 (-)
G414782 NA non-coding upstream 12974 10542265 ~ 10543956 (-)
G414794 NA non-coding upstream 145911 10675202 ~ 10680194 (-)
G414825 NA non-coding upstream 151152 10680443 ~ 10681009 (-)
G414802 NA non-coding upstream 157095 10686386 ~ 10689739 (-)
G414826 NA non-coding upstream 174098 10703389 ~ 10703637 (-)
G414498 NA other downstream 840233 9658049 ~ 9713722 (-)
CI01000300_08959695_08973598 UGDH, UGDH.L other downstream 1525038 8958963 ~ 8973750 (-)
G413140 NA other downstream 2354149 8146532 ~ 8146889 (-)
G412681 NA other downstream 3810705 6652998 ~ 6690333 (-)
G412555 NA other downstream 4285459 6214920 ~ 6215579 (-)
CI01000300_10698449_10700497 NA other upstream 166720 10696011 ~ 10701375 (-)
G414829 NA other upstream 176709 10706000 ~ 10706323 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001248 usp53b coding NC_007112.7 CM002885.2 25886437 ~ 25911901 (-)