CI01000300_10408955_10421392


Basic Information

Item Value
gene id CI01000300_10408955_10421392
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 10408819 ~ 10421392 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_10408955_10421392.mRNA
CTGATGGGAGCGGTGTGATTAATATCTCAGACAATTCCTTGGCAAAAAAAGCCAGAAGGATAAAAAAGGAAAAGAAAAAAGATTGTGATGGAGAAATAGATGCACTGGTGTCATACAAAGCAGACATGCTGAACAAACTCCTTACAAGACAAAAACAGAAAAAGGAGAGATTTAAAGCTGGGAAGACAAAAGGCAAAATCAATGATTTCAAGCTTTCAGATGATGAAGAAGAAAATGTCAAACCCAAAAAAGTATCTTTCATGAAAACCAAAAGAACCAGCTCACCTGTGCATTTTGAAGAGCTAAACTCCATGGGGAGTGCAGATGACCAGCATAGTTCTGTCCATTCCACCCAATCCAGGAATACTTCTCAAAGTCCAAGCAATTCTTACACTCCAGAGAAAAATCAACTGCCAGATTCCCCTTTTTCCTCTCTTTCTGACAAGTTTCAACCAGAATCTACTTTACCCCAGAAGGATGAACAGTTAAAATCAGTAATGAGGTTGAGGAACCAAACAGAATCTGTGGTGAGGAAGAGCCTTTCAGAAACACCACTGCCACTAAACTCTGAAAATAGCCAATGGGAATCTTCCGTCCCCCTTACATCAGAAGGCTCACAGTGGGACAGTCCAGTACCATTGCCTTCAGAAAAAGATGAGGACAACCAAAGGATTGGTGAAGATGGTGACGTACCCATTCCTCAACCCAGGGAGAGAAGTGTTAAACCAAAACTCTCTACAGACATGTCCCCCAGACCCAAGCCCAGACAGAGGACAGCAAATATGTGTGACACTGGTCAGTTAGAAGAGGAACCGCAAGCAGAAACCCCTGCCTTCAGCAGAACAGCCACATCCTCCATGTCTATACCCTTCTCCAACAGATCCTCTTCTGAGAAGACAAATGAAAGTTTTCAGGAGATTTTCCAGGATGACCTTGACCACATGTCAACCACACAAAGCCGAATGTCTAGAAAATCCACAGAAAGACCTTCAAGCTCCCAGTCATGCAGTTCCAGAAAGTCCAAAAGCTCATATATAGAGTCCAAATACCTTGGAACATTGAAGATTTTGGATCAGAGGACACAGGTTCCAGAGGCAGCAGATTCACTAAGAGCTGCTGTGTACCAGGAAAAGCTTGCTAAAATTGCAGATGCAAAGGCCTCTTATGATGCCTGGAAAGAGAAAAAAGCTGAAATCATCAGAAAGAAAGTCAAAGAAAATCAGGAAGCAATCAACCAACAACAAATGGAAATGGATAAAAAACAAGAAAAAAAGGAAACAGCAAAACAGGTTTTTGAGAAGTGGAAAGAGGAGCATGACAGTATCCTTAAAGACAGGATAAAGGAAAAGAAGCAGACTGAGAGAAAAAAGAAACTACAGCAGGTCAGAGAAAAAGAGGAAAGAAAGAAGGACTGCACCTCTGCTTTCACTGAATGGAGTTACCGAAAGAAGGATGTCATTGAAGAGAAGGTAAGGGCAGAACGCAGGAAGGAGAAAATAAAGGAAGTGGAGGAGAAATATGAAAAGGAGGAAAAAGAAAAAATGGCCTTGGAGATGTACGACAAATGGCTGAGAAGAAAAGAGTTTCAACAAAAAAGAGACAGAAATGAAAAGAGGATACAGGCTATTCTTCAGGATGAGCCCCCTCCACCCTGGAGCCCACCTAATAAAACCATCCCATTTGGAAAATGAGCTTTATTTAATTTTGTTTTTAACCCCCTTTTTTTTCCTTTTTTTTTTTTTGACATTTGATATAATTATTTCAGGAATAATTGAAACAAATACTACATTACATTTTCATCAAGATGTCTTTAAATTAGAAAATATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_10408955_10421392.mRNA True 1827 mRNA 0.40 9 10408819 10421392

Neighbor

gene id symbol gene type direction distance location
CI01000300_10370185_10373703 FGG coding downstream 35077 10369923 ~ 10373742 (-)
CI01000300_10313545_10352632 DCHS2 coding downstream 55303 10313282 ~ 10353516 (-)
CI01000300_10273821_10275599 SFRP2 coding downstream 131324 10273449 ~ 10277495 (-)
CI01000300_10252331_10267292 ARFIP1 coding downstream 141120 10252331 ~ 10267699 (-)
CI01000300_10221037_10234396 FHDC1 coding downstream 174423 10220518 ~ 10234396 (-)
CI01000300_10501568_10527998 USP53B coding upstream 79646 10501038 ~ 10529291 (-)
CI01000300_10534320_10539931 MYOZ2, MYOZ2B coding upstream 112002 10533394 ~ 10539987 (-)
CI01000300_10550389_10552830 NA coding upstream 128659 10550051 ~ 10555244 (-)
CI01000300_10591932_10594068 NA coding upstream 168992 10590384 ~ 10594068 (-)
CI01000300_10599691_10601222 NA coding upstream 177817 10599209 ~ 10601222 (-)
G414757 NA non-coding downstream 1106 10407360 ~ 10407713 (-)
G414738 NA non-coding downstream 26613 10381851 ~ 10382206 (-)
G414730 NA non-coding downstream 66130 10342467 ~ 10342689 (-)
G414723 NA non-coding downstream 114389 10294185 ~ 10294430 (-)
G414722 NA non-coding downstream 116321 10292159 ~ 10292498 (-)
G414758 NA non-coding upstream 7302 10428694 ~ 10429137 (-)
G414759 NA non-coding upstream 8404 10429796 ~ 10430161 (-)
G414764 NA non-coding upstream 29264 10450656 ~ 10452540 (-)
G414775 NA non-coding upstream 39528 10460920 ~ 10461996 (-)
G414766 NA non-coding upstream 74721 10496113 ~ 10499071 (-)
G414498 NA other downstream 748014 9658049 ~ 9713722 (-)
CI01000300_08959695_08973598 UGDH, UGDH.L other downstream 1432819 8958963 ~ 8973750 (-)
G413140 NA other downstream 2261930 8146532 ~ 8146889 (-)
G412681 NA other downstream 3718486 6652998 ~ 6690333 (-)
G412555 NA other downstream 4193240 6214920 ~ 6215579 (-)
CI01000300_10698449_10700497 NA other upstream 274619 10696011 ~ 10701375 (-)
G414829 NA other upstream 284608 10706000 ~ 10706323 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001246 map9 coding NC_007112.7 CM002885.2 25737767 ~ 25749888 (-)