CI01000300_10252331_10267292 (ARFIP1)


Basic Information

Item Value
gene id CI01000300_10252331_10267292
gene name ARFIP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 10252331 ~ 10267699 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000300_10252331_10267292.mRNA
ATTATTTACTGAAGGCCTGAATTTGCATTTTTTGTGTAAAATAATGCAGGTAGGAGTCTACAGTTTATAAGAAGGACTGTATTTGTATTTGTGTCAAAAAACATTAACGGAAAGGCAATTGAAACTAACATTGGGTCAGAAAGGTTGTGCGTATACACTGTATTTCGATTTACTAACCCATCTTTTGCCAGGTCTGAATTTCAGTGTTCAACATTGGTTCTTGGGTATTGACCTGTAAAAATAACTGGTGGTTTGTACTTCAAGTAGATGTTTTTTTTCCGTGATGTATAATGGCAGAATCCCTTCCTGAAACATCAGCCTCTATGGAATCCTAACATTACTTGAATTCAGCACAAGAAGGAAAAAAAAACTTGGTCAGTTGCTCATATGTATGTTTACTTTCAGGAATGTCAGAAGCTAGTTTTGACTCGGAGAAGAATGCTTCACAGGATAATCAATCGGACCCTAAAGAACAGGGCCTCCAAAATACTGCTGAATCTCTGAGCCAATCAGAGGCCAGAAAAAACAGCCTGGATGAGTCGCACATGACTGAAATTGACATCAGTGAGAACAATGAAGTTGGAAACCACAATTATACTCCTAGTGAGGATGGTGATGAAGATGAAGATTCTCAGACCCACAGTAAAACTAGTGGAATCACTCAGGATAATCCTAATTCTGAAAGAATGAGCAGTGTGACGACAAAAGCTGAAGTGAAGGTGGCTATGGCAGAAGAGGCCCACAGAAGCCCTGCTGCCCAAATCTCAGTCACCAGAAACGGAGAAGCAGACAAAAGTCACGAGGAAGTGTTTCAGAGGGATGTGCCACATAATATCTCTGGACCAATCATGTCACACTCCCACAGTTCACCTGAAAACTATGCAATGAATGAGGGAGTGGTCCAAGTGGGTCCATACACAGGGTCGCCATTCCAGGCCACCACACCTACAGTTGTCCCCAGTCCTGCAGCAGCCAGCCGGCTAGCTCGCAGCATCAGTGATAGTCAGGTGGAGACACAGAAAGGTGCTTTGAGAGAGCAGCAGATGGGAGGAGCAGTAGTCCTTGCTGATGACATAAAGAGTCCTGCCATAGAGAAACTGGAGCTGGTGAGGAAGTGGAGCATCAACACTTACAAATGCACTAAGCAAATTCTGTCGGAGAAGTTAGGTCGGGGCTCCCGTACAGTTGATCTGGAGCTGGAGGCTCAGATCGAGGTTCTTCGTGACAACAAACGCAAGTACGAGCATGTTGTCAAACTGGCACAGACGCTGTGCACTCAACTGGCGCAGATGCTGCAGACGCAAAGACATCTAGGTGATGCGTTTGCCGACCTTAGTCTCAAGACACCCGAACTACATGAGGAATTTGGCTACAATGCTGAAACTCAAAAACTCCTGGCGAAAAATGGAGAAACCCTGTTGGGAGCTATCAACTTCTTCATCGCTAGTGTTAAAACTCTAGTGGATAAAACTATAGAGGACACCTTGATCAACATTAAGCAATATGAAGCAGCAAGGGTTGAGTATGATGCGTATCGCACAGATTTAGAGGAGCTCAATCTGGGTCCACGGGACGCCAACACACTCCCCAAGATTGAGCTGTCTCAGCAACAGTTCCAGATCCATCGTGAAAAATATGAAAAGATGCGCAATGATGTCTCTGTCAAACTGAAGTTTCTGGAGGAAAACAAG

Function

symbol description
arfip1 Predicted to enable phospholipid binding activity. Predicted to be involved in intracellular protein transport and regulation of Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of protein secretion. Predicted to be located in Golgi membrane. Predicted to be active in trans-Golgi network membrane. Is expressed in notochord. Orthologous to human ARFIP1 (ADP ribosylation factor interacting protein 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20314 ARFIP; arfaptin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000300_10252331_10267292.mRNA True 1691 mRNA 0.44 8 10252331 10267699

Neighbor

gene id symbol gene type direction distance location
CI01000300_10221037_10234396 FHDC1 coding downstream 17935 10220518 ~ 10234396 (-)
CI01000300_10176172_10189470 TRIM2, TRIM2A coding downstream 62442 10175937 ~ 10189889 (-)
CI01000300_10082094_10086801 NA coding downstream 165311 10081975 ~ 10087020 (-)
CI01000300_10074725_10078309 NA coding downstream 173599 10074377 ~ 10078732 (-)
CI01000300_10002321_10003041 NA coding downstream 249290 10002304 ~ 10003041 (-)
CI01000300_10273821_10275599 SFRP2 coding upstream 5750 10273449 ~ 10277495 (-)
CI01000300_10313545_10352632 DCHS2 coding upstream 45583 10313282 ~ 10353516 (-)
CI01000300_10370185_10373703 FGG coding upstream 102224 10369923 ~ 10373742 (-)
CI01000300_10408955_10421392 NA coding upstream 141120 10408819 ~ 10421392 (-)
CI01000300_10501568_10527998 USP53B coding upstream 233339 10501038 ~ 10529291 (-)
G414587 NA non-coding downstream 77183 10170685 ~ 10175148 (-)
G414592 NA non-coding downstream 94928 10151951 ~ 10157403 (-)
G414693 NA non-coding downstream 125771 10125077 ~ 10126560 (-)
G414602 NA non-coding downstream 184935 10064682 ~ 10067396 (-)
G414590 NA non-coding downstream 252084 9993022 ~ 10000247 (-)
G414719 NA non-coding upstream 21400 10289099 ~ 10289563 (-)
G414722 NA non-coding upstream 24460 10292159 ~ 10292498 (-)
G414723 NA non-coding upstream 26486 10294185 ~ 10294430 (-)
G414730 NA non-coding upstream 74768 10342467 ~ 10342689 (-)
G414738 NA non-coding upstream 114152 10381851 ~ 10382206 (-)
G414498 NA other downstream 591526 9658049 ~ 9713722 (-)
CI01000300_08959695_08973598 UGDH, UGDH.L other downstream 1276331 8958963 ~ 8973750 (-)
G413140 NA other downstream 2105442 8146532 ~ 8146889 (-)
G412681 NA other downstream 3561998 6652998 ~ 6690333 (-)
G412555 NA other downstream 4036752 6214920 ~ 6215579 (-)
CI01000300_10698449_10700497 NA other upstream 428312 10696011 ~ 10701375 (-)
G414829 NA other upstream 438301 10706000 ~ 10706323 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location