RNA id: TCONS_00001973


Basic Information

Item Value
RNA id TCONS_00001973
length 1106
RNA type processed_transcript
GC content 0.43
exon number 3
gene id XLOC_001223
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23323002 ~ 23370618 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGCTACGACAGGGGCAGGAGCCGGACGGGGCCGAAAGAGAGCAGCACCTTCTCAAGATCCTTCCAGCACAGCCTCAACTGATGCACTCAGTGACAAGACACCAAAACAGCAGAAAGAAGCAGAGCCGAAAAGAGCAGCGCCACAGAGACAGATTGACCTGCAAAGatCAGGGAGGGTAGCGCAGCGAGATCAGCATCATCAGGACACACACCCGTCTCAAAAGACATACGGAAGTGAAGGGGAGACAGAGAGGGAATTTGAGTCCAGTCCAGAGAATGTACTCTCACTCACACAGCTTCAGGAGCAGCAGGAACAAGCCTTGCACAGACGCTTTAGAGCATCGGGTCCCAAGCAGAGACAATCCAGCCACACAGCAGAGCAGGGGGAGCTGTTAgTAAAGCGTCGGATCATGCAAACGAGGATGGTCAGGCAGTAAAGGACTGAATGACCCAAAGAAGAGACACattcacttaaacacacacaaacacacacacacacacacactctctcttcaCATCCTGAACTGTCATTTACCCCACGCCTCTGAGAAATGAATTCTTTAGATTCAAATGTTCAAACTTGTATGTAGAAAAACAGAcctgtttgttttaatttgatttttgttttctgttcaaaTTGTTCTTGTTGCCCTTTGCCTCTGTCTGgagcaatttttaaaaacaaacctttgaaagaaaaaaaaatctgttttaatctCCTTTAAGGTTGCTTATTAAAACCTGAAAAGatgttttttactgttttatctcCCCTCTCTTTTAATCCTCTATTAAAGCCAGATACTGTACTCCGGTTTCATTGAGGCTCATTTTCCTGCATTCAGTTCCATGAAAACTCTCACACTGTATCATACCCCGTGTATGAGCACGAATTCCTCACACTGTAACGAGGCTTGGAGTCATTCTAAACACTGAAAGTTTTTACTGCTCAAAGTTTTTGACGTTTAAACAGAAGTTACTCCGTTTTCCTCCACATTCATACAATGTCCAACTATTTCCATGTTGAAAGCGAGATCTAGAATAGACATGAAGGCACAGGACACACAGGAGTtttcaattttcactttttttaattcaaaagaaT

Function

GO:

id name namespace
GO:0008156 negative regulation of DNA replication biological_process
GO:0007049 cell cycle biological_process
GO:0007064 mitotic sister chromatid cohesion biological_process
GO:0051301 cell division biological_process
GO:0006281 DNA repair biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1612 Predicted to be involved in DNA repair; mitotic sister chromatid cohesion; and negative regulation of DNA replication. Predicted to act upstream of or within cell division. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in chromatin and nucleus. Orthologous to human PDS5A (PDS5 cohesin associated factor A).

Ensembl:

ensembl_id ENSDART00000142840

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001972 lncRNA downstream 14740 23301280 ~ 23308262 (-) True XLOC_001222
TCONS_00001966 lncRNA downstream 48962 23269859 ~ 23274040 (-) False XLOC_001220
TCONS_00001967 lncRNA downstream 51211 23270888 ~ 23271791 (-) True XLOC_001220
TCONS_00001960 lncRNA downstream 54474 23267344 ~ 23268528 (-) False XLOC_001220
TCONS_00001950 lncRNA downstream 471583 22845289 ~ 22851419 (-) True XLOC_001217
TCONS_00003412 lncRNA upstream 86849 23416915 ~ 23436608 (-) True XLOC_001224
TCONS_00003413 lncRNA upstream 115419 23445485 ~ 23447300 (-) True XLOC_001225
TCONS_00003414 lncRNA upstream 421887 23751953 ~ 23783769 (-) True XLOC_001229
TCONS_00003415 lncRNA upstream 578651 23908717 ~ 23911006 (-) True XLOC_001230
TCONS_00001996 lncRNA upstream 1210352 24540418 ~ 24552267 (-) True XLOC_001233
TCONS_00001970 mRNA downstream 14694 23297623 ~ 23308308 (-) False XLOC_001222
TCONS_00001971 mRNA downstream 14777 23298936 ~ 23308225 (-) False XLOC_001222
TCONS_00001968 mRNA downstream 28249 23283532 ~ 23294753 (-) False XLOC_001221
TCONS_00001969 mRNA downstream 29741 23284138 ~ 23293261 (-) True XLOC_001221
TCONS_00001962 mRNA downstream 48498 23269503 ~ 23274504 (-) False XLOC_001220
TCONS_00001978 mRNA upstream 13697 23343763 ~ 23370395 (-) True XLOC_001223
TCONS_00001979 mRNA upstream 176459 23506525 ~ 23557877 (-) True XLOC_001226
TCONS_00001980 mRNA upstream 243158 23573224 ~ 23595921 (-) False XLOC_001227
TCONS_00001981 mRNA upstream 244766 23574832 ~ 23595779 (-) False XLOC_001227
TCONS_00001982 mRNA upstream 254964 23585030 ~ 23596391 (-) False XLOC_001227
TCONS_00001939 other downstream 648389 22663723 ~ 22674613 (-) True XLOC_001211
TCONS_00001929 other downstream 1130935 22191952 ~ 22192067 (-) True XLOC_001205
TCONS_00001923 other downstream 1642524 21680364 ~ 21680478 (-) True XLOC_001199
TCONS_00001916 other downstream 1795631 21526672 ~ 21527371 (-) False XLOC_001195
TCONS_00001899 other downstream 2309788 21011062 ~ 21013214 (-) True XLOC_001189
TCONS_00001976 other upstream 9898 23339964 ~ 23340503 (-) False XLOC_001223
TCONS_00001977 other upstream 10905 23340971 ~ 23341690 (-) False XLOC_001223
TCONS_00001997 other upstream 1495081 24825147 ~ 24825263 (-) True XLOC_001235
TCONS_00002010 other upstream 2225659 25555725 ~ 25557930 (-) False XLOC_001242
TCONS_00002015 other upstream 2345631 25675697 ~ 25676340 (-) True XLOC_001244

Expression Profile

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