RNA id: TCONS_00001966


Basic Information

Item Value
RNA id TCONS_00001966
length 713
lncRNA type retained_intron
GC content 0.49
exon number 6
gene id XLOC_001220
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23243093 ~ 23274504 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAATGAAGACCATTCTCAGTAACCAGACAGTGGACATCCCTGACAATGTCACGGTGTCCCTCAAGGGCCGCACAGTTACCGTGAAGGGACCCCGTGGTGTTCTCCGCCGGGAGTTCAACCACATTAACCTGGAACTCAGTCTGTTGGGcaaaaaacagaaaaagctGCGTGTGGATAAGTGGTGGGGTAACAGAAAGGAGTTGGCCACCGTCCGCACCATCTGCAGTCATGTCCAGAACATGATCAAGGGTGTCACCCTGGTAAGTAGTGTAATGTGTTGGTGCTTTAATCTTTTCCcaatcatattaaataaataagggctgccataaaatgcttttttttgtttcCCAGGGCTTCAGGTACAAAATGCGATCTGTATATGCCCATTTTCCCATTAATGTGGTCATCCAAGAGTCTGGCTCTCTGGTGGAGATCAGAAACTTCTTGGGAGAGAAGTACATCCGCCGTGTCCGCATGAGGCAAGGAGTTGCATGTGCAGTGTCTGCCGCTCAAAAAGACGAGTTGGTTCTGGAGGGTAATGATATTGAGCTGGTGTCAAACTCAGCGGCCCTCATCCAGCAGGCAACCACAGTGAAAAATAAGGATATCAGAAAGTTCCTGGACGGTATTTACGTCTCTGAAAAAGGCACTGTAGTGGAGGCAGAGTCATAGAGAACCGAGAGCTGCTCTGATCCAGCAGGCCACCACTGTG

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko04977 Vitamin digestion and absorption
ko01523 Antifolate resistance
ko03032 DNA replication proteins
ko03400 DNA repair and recombination proteins
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-030131-8646 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL9 (ribosomal protein L9).

Ensembl:

ensembl_id ENSDART00000122877

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001960 lncRNA downstream 1331 23267344 ~ 23268528 (-) False XLOC_001220
TCONS_00001950 lncRNA downstream 418440 22845289 ~ 22851419 (-) True XLOC_001217
TCONS_00001938 lncRNA downstream 617833 22651579 ~ 22652026 (-) True XLOC_001210
TCONS_00003411 lncRNA downstream 1268809 21999781 ~ 22001050 (-) True XLOC_001204
TCONS_00001926 lncRNA downstream 1388091 21880255 ~ 21881768 (-) True XLOC_001201
TCONS_00001972 lncRNA upstream 27240 23301280 ~ 23308262 (-) True XLOC_001222
TCONS_00003412 lncRNA upstream 142875 23416915 ~ 23436608 (-) True XLOC_001224
TCONS_00003413 lncRNA upstream 171445 23445485 ~ 23447300 (-) True XLOC_001225
TCONS_00003414 lncRNA upstream 477913 23751953 ~ 23783769 (-) True XLOC_001229
TCONS_00003415 lncRNA upstream 634677 23908717 ~ 23911006 (-) True XLOC_001230
TCONS_00001958 mRNA downstream 1290 23243093 ~ 23268569 (-) False XLOC_001220
TCONS_00001959 mRNA downstream 1846 23265672 ~ 23268013 (-) False XLOC_001220
TCONS_00001953 mRNA downstream 112276 22943551 ~ 23157583 (-) False XLOC_001219
TCONS_00001957 mRNA downstream 159026 22945267 ~ 23110833 (-) False XLOC_001219
TCONS_00001956 mRNA downstream 159026 22945267 ~ 23110833 (-) False XLOC_001219
TCONS_00001968 mRNA upstream 9492 23283532 ~ 23294753 (-) False XLOC_001221
TCONS_00001969 mRNA upstream 10098 23284138 ~ 23293261 (-) True XLOC_001221
TCONS_00001970 mRNA upstream 23583 23297623 ~ 23308308 (-) False XLOC_001222
TCONS_00001971 mRNA upstream 24896 23298936 ~ 23308225 (-) False XLOC_001222
TCONS_00001974 mRNA upstream 49130 23323170 ~ 23370529 (-) False XLOC_001223
TCONS_00001939 other downstream 595246 22663723 ~ 22674613 (-) True XLOC_001211
TCONS_00001929 other downstream 1077792 22191952 ~ 22192067 (-) True XLOC_001205
TCONS_00001923 other downstream 1589381 21680364 ~ 21680478 (-) True XLOC_001199
TCONS_00001916 other downstream 1742488 21526672 ~ 21527371 (-) False XLOC_001195
TCONS_00001899 other downstream 2256645 21011062 ~ 21013214 (-) True XLOC_001189
TCONS_00001973 other upstream 48962 23323002 ~ 23330066 (-) False XLOC_001223
TCONS_00001976 other upstream 65924 23339964 ~ 23340503 (-) False XLOC_001223
TCONS_00001977 other upstream 66931 23340971 ~ 23341690 (-) False XLOC_001223
TCONS_00001997 other upstream 1551107 24825147 ~ 24825263 (-) True XLOC_001235
TCONS_00002010 other upstream 2281685 25555725 ~ 25557930 (-) False XLOC_001242

Expression Profile

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