XLOC_001224


Basic Information

Item Value
gene id XLOC_001224
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23416915 ~ 23436608 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003412
aagaataCAGGGTCGGTGATATAAGGTTGCCTTGGCCAAGACAAGAATACTCATGAGGAAGACCATGATGAAAAACACCCACATGAAGAACCTGTCCATCACCTTGGCAACCTTCTTCCACTCGGCCCCTTTGGCCTGGTGTCCCCTCTGCTCTCTGAAACAGTTAGCTATGTACTCAATGTTTCGCACCAATTTCTGATGTTTTCCACAGACACACCCTGTGCCAGTAGTTGTCTTATTGTAGCTATCTGCTCCAAAGGTTTTGCTGTAGCCATTATCGTGAAGGTAGCCGACTCCATTGAGATACCCATTGCCCTGATCATATGTGTATCCGTTAATTTTTTCTGGAATGGAGATTTCACTGTCTTTGAGTTTTTCCTGACTTGTTAGTGGGAGCTTTTCGCTTCCATCTCGACCGATGAAGTGTGTATATTTTGGATGATGGGAACTCTGTCGAACAGGGGAATTTGATGACGATCGGGTTCTTCTTTGCTGCTCATTCCTATGTTGCCGATAGCTGCTGTTTTTGTGATGGTACCCATTCCCATGTCGGTGGTCTCTGTGACTGTACCCATTAAACTGACTGCGGATTCTCTCATCAAGGTGACAGTCTTCATAAAACCCTTTGTCAAAATACCCATCTCTCTCCAGGCTAGCCAGTGGATCTT

Function

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003412 True 668 lncRNA 0.45 2 23416915 23436608

Neighbor

gene id symbol gene type direction distance location
XLOC_001223 pds5a coding downstream 46297 23323002 ~ 23370618 (-)
XLOC_001222 smim14 coding downstream 108607 23297623 ~ 23308308 (-)
XLOC_001221 ugdh coding downstream 122162 23283532 ~ 23294753 (-)
XLOC_001220 rfc1 coding downstream 142411 23243093 ~ 23274504 (-)
XLOC_001219 adgrl3.1 coding downstream 259332 22943551 ~ 23157583 (-)
XLOC_001225 NA coding upstream 8877 23445485 ~ 23447300 (-)
XLOC_001226 fam184b coding upstream 69917 23506525 ~ 23557877 (-)
XLOC_001227 lcorl coding upstream 136616 23573224 ~ 23596391 (-)
XLOC_001228 si:dkeyp-26a9.7 coding upstream 160123 23596731 ~ 23598674 (-)
XLOC_001229 NA coding upstream 315345 23751953 ~ 23783769 (-)
XLOC_001211 FP245458.1 non-coding downstream 742302 22663723 ~ 22674613 (-)
XLOC_001205 CR388092.1 non-coding downstream 1224848 22191952 ~ 22192067 (-)
XLOC_001204 NA non-coding downstream 1415865 21999781 ~ 22001050 (-)
XLOC_001199 CR786570.1 non-coding downstream 1736437 21680364 ~ 21680478 (-)
XLOC_001189 BX323083.5 non-coding downstream 2400985 21010689 ~ 21015930 (-)
XLOC_001230 NA non-coding upstream 472109 23908717 ~ 23911006 (-)
XLOC_001234 NA non-coding upstream 1165724 24602332 ~ 24606762 (-)
XLOC_001235 BX511127.1 non-coding upstream 1388539 24825147 ~ 24825263 (-)

Expression


Co-expression Network