XLOC_001222 (smim14)


Basic Information

Item Value
gene id XLOC_001222
gene name smim14
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23297623 ~ 23308308 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001970
TTTGCTTTGCCGATCCTATCAAAACACAGACGGAACATCAGCCGGAGGTGCAGCTCTTTGCCAAACGCCAGTGTACACAGGGATCATTTGCACTGGGTTTTGTCTGTCCAACCGGAGTCTCTCAAGGATCGATATAAACATATCAGAGCTGCTTATTTAAAGCGAATGCTTTTAAATCTCTTCGAGTGAGTTGTCCAAATCATTGgAGAGAGGAGAGGATGGCAGAGGGAGGTTTTGACCCTTGCGAGTGCATCTGCTCCCATGAACATGCCATGAGGAGACTGATCAACCTGCTGAGACAGTCCCAGTCCTACTGTACAGACACCGAGTGCCTTCAGGACATGCCAGGCCCCAACTCCTCAGTAGAAGGCGACATCACTATACCCATGATTATTATGGGATGGCTGGTTCTAGCTCTTGTACTGTTTCTTTTCCGCCCAGCCAGCATGAGGGGCCCTTCAGCCAACAACAAGCCAATCGGTCCACATGGTAATCGTGGCAGAGAGCCGCCAGCACCTCCAGTGGACTAGCGGTTTCCTAACAGAAGGAGATTTGATCGTTTAATCCAGCTTTCATCTGATCAGCTCCTTTGACCAGCCTAACTTTCCTTACCTGTCAGTTTTTCAGATTCTTTCATCCAATAACGGGAGGCTGATCTCTGTAGATGCTTGAACAGCACGGTGTTTCATATGTGTGAAGATTTCAGGGTTTATAAATCTGTCTTCAGCTTCTTACTTcatcttatatttttattattcagcatCATTATGTATTTAGTAAATTGTTACAATGATATAAAGGCCTATATAATGACACTAAACAAATCTGGAAAATGGAGGAGAATTGGGATAATTTTGCGTAGACTAAAAGAAGCGATTGTTTCTTGTCTAATATGATGGCTTATACATTCCAAAGATATTAAGATTTCACAGACGTGATGTCATCGTCTGCGTAAGAGCATCAGCCTTGACTCTGCATTGGGTAATTCTAAACATGGGTGTACTTGAAATGACTCACACATTTTGGTTGACCAGACCACCTTTCTCTGCGCAGACGGAAATAATGAAATGGGTGTATTCCAGTATTTTCTTGACTCTCCTCCATGTAGTCATGACTCTGTGAATGTTGTCATCATCTGGGATCTGTTGACCACAGAGAGACGGCTGATTTAAAGCAGACCTCTCCACCCTGAAGACTCCGAAAGCATATTTAACCCTTAAAATCACTACAGAATAACTAGTGCAACTGCTAGTACACAGTCAAATGGCATTCTGAATAGTTTTCACCCAGTTGCTCAGGTATCGCTATGTAGCTATACTTAATCGAACAGTTATCAAATGGTATTGGGATTCTACTAAATTTACAGAAatccttaaaggggcagttcagcCGAAACTCATCATTTTCTTATCCTTGACTTGTTCCTAGTTGTAGGAATAATGAAAACTATGGAAGTCATGGTTATTGTTTTCtagtatttttcaaaatatattttgcgTTCAGCAGAATGAatttggtttggaacaagtcgtcaagtgtgagtaaatgataacagctaaacattttttttttttttggctgaagtGTCCCTTTACTGCTTAAGAGTGAGATTCCTTTTTCAGATTTGCCTAAAGACAAATTGAAATGTAGCACTTTAGCTGTGGTACCTTTAAACAGAAAGCAAAGGTCCAGAAAAACACCAAAGAAACAATGTAAATATGTTTCAAGTGTGGTGTAACTGCTCTTCATTTCTTTGAGAATGTTACAATATCTTGGTTGCAAAAAGTCAGTTAATTGGTCAGACTAATGATTCCTGGAAAGGTCAGTTGAGGTGGTGGTGAGGATTTCAGGGCATATACAATGAATTCTGTCTACACTGTTTAAATGAAACTGCTCTATGTGAAAGGGCTAATCTATGCACTTTTGGTTACttcaaataaataagaataacagCA
>TCONS_00001971
TCATTTGCACTGGGTTTTGTCTGTCCAACCGGAGTCTCTCAAGGATCGATATAAACATATCAGAGCTGCTTATTTAAAGCGAATGCTTTTAAATCTCTTCGAgAGAGAGGAGAGGATGGCAGAGGGAGGTTTTGACCCTTGCGAGTGCATCTGCTCCCATGAACATGCCATGAGGAGACTGATCAACCTGCTGAGACAGTCCCAGTCCTACTGTACAGACACCGAGTGCCTTCAGGACATGCCAGGCCCCAACTCCTCAGTAGAAGGCGACATCACTATACCCATGATTATTATGGGATGGCTGGTTCTAGCTCTTGTACTGTTTCTTTTCCGCCCAGCCAGCATGAGGGGCCCTTCAGCCAACAACAAGCCAATCGGTCCACATGGTAATCGTGGCAGAGAGCCGCCAGCACCTCCAGTGGACTAGCGGTTTCCTAACAGAAGGAGATTTGATCGTTTAATCCAGCTTTCATCTGATCAGCTCCTTTGACCAGCCTAACTTTCCTTACCTGTCAGTTTTTCAGATTCTTTCATCCAAT
>TCONS_00001972
GGTGCAGCTCTTTGCCAAACGCCAGTGTACACAGGGATCATTTGCACTGGGTTTTGTCTGTCCAACCGGAGTCTCTCAAGGATCGATATAAACATATCAGAGCTGCTTATTTAAAGCGAATGCTTTTAAATCTCTTCGAGTGAGTTGTCCAAATCATTGgAGAGAGGAGAGGATGGCAGAGGGAGGTTTTGACCCTTGCGAGTGCATCTGCTCCCATGAACATGCCATGAGGAGACTGATCAACCTGCTGAGACAGTCCCAGTCCTACTGTACAGACACCGAGTGCCTTCAGGACATGCCAGGCCCCAACTCCTCAGTAGAAGGCGACATCACTATACCCATGATTATTATGGGATGGCTGGTTCTAGCTCTTGTACTGTTTCTTTTCCGCCCAGCCAGCATGAGGGGCCCTTCAGCCAACAACAAGCCAATCGGTCCACATGGTGTAAGTCAAATCAAACAGACTTCCTCTGTCAGAAATGAATTAAGGTGATCCAAATTTAAAATTGATCAACAATCGAACTCCATTTCATCCACAATTAGATGATAGTCAGTGCAAGTGCTGCAGTGCATATGGCCATGATATTagtacacagattttttttaaaatctttttctcTTTACCCCACTGCCTTTATTTTATGTGGCTAAGATTCACCCAACAATAATCAGAATTGTTGGCTCATACTGACATTATACAGGGTTCGTATGGGTACTGGGGGTTAAACCCGATTTTTAACTGTAGTTGAGATGCTTTAGTAATTTTATCTTATTAAA

Function

symbol description
smim14 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human SMIM14 (small integral membrane protein 14).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-22 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human SMIM14 (small integral membrane protein 14).

Ensembl:

ensembl_id ENSDARG00000005799

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001970 False 1955 mRNA 0.40 5 23297623 23308308
TCONS_00001971 False 539 mRNA 0.49 5 23298936 23308225
TCONS_00001972 True 777 lncRNA 0.43 4 23301280 23308262

Neighbor

gene id symbol gene type direction distance location
XLOC_001221 ugdh coding downstream 2870 23283532 ~ 23294753 (-)
XLOC_001220 rfc1 coding downstream 23119 23243093 ~ 23274504 (-)
XLOC_001219 adgrl3.1 coding downstream 140040 22943551 ~ 23157583 (-)
XLOC_001218 SMIM18 coding downstream 436275 22857753 ~ 22861348 (-)
XLOC_001217 qdprb1 coding downstream 446142 22845225 ~ 22851481 (-)
XLOC_001223 pds5a coding upstream 14694 23323002 ~ 23370618 (-)
XLOC_001224 NA coding upstream 108607 23416915 ~ 23436608 (-)
XLOC_001225 NA coding upstream 137177 23445485 ~ 23447300 (-)
XLOC_001226 fam184b coding upstream 198217 23506525 ~ 23557877 (-)
XLOC_001227 lcorl coding upstream 264916 23573224 ~ 23596391 (-)
XLOC_001211 FP245458.1 non-coding downstream 623010 22663723 ~ 22674613 (-)
XLOC_001205 CR388092.1 non-coding downstream 1105556 22191952 ~ 22192067 (-)
XLOC_001204 NA non-coding downstream 1296573 21999781 ~ 22001050 (-)
XLOC_001199 CR786570.1 non-coding downstream 1617145 21680364 ~ 21680478 (-)
XLOC_001189 BX323083.5 non-coding downstream 2281693 21010689 ~ 21015930 (-)
XLOC_001229 NA non-coding upstream 443645 23751953 ~ 23783769 (-)
XLOC_001230 NA non-coding upstream 600409 23908717 ~ 23911006 (-)
XLOC_001234 NA non-coding upstream 1294024 24602332 ~ 24606762 (-)

Expression


Co-expression Network