XLOC_001217 (qdprb1)


Basic Information

Item Value
gene id XLOC_001217
gene name qdprb1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 22845225 ~ 22851481 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001949
AGTAGGAGGCGCATGTTCTGATTTCTTTGCATAACACGGTCTCGTGCTCGTGAAGACAGAATGGCAGCTACAGATGCACAGAAAGTGATTGTTTACGGGGGAAAAGGAGCTCTGGGCTCGGCATGTGTGCAGTATTTCAAAGCTAAACACTGGTGGGTTGCCTCTATTGATCTCAGTGCCAATGAAGAAGCCAATGCCAATGTTACAGTTAAAATGACTGAGTCCTTCACTGAGCAAGCCAACCAGGTAACGGCAGATGTTGGTGATCTGTTAGGTGAAGAGAAGGTTGACGCTATCTTCTGCGTGGCTGGAGGTTGGGCAGGGGGCAGCGCTAAGGCCAAAACTCTGTTTAAGAATGCTGATCTGATGTGGAAGCAGAGTGTATGGACCTCCACTATTTGTAGTCACCTAGCAACCAAACACCTGAGAGAGGGGGGGCTGCTCACACTGGCAGGGGCCAAAGCAGCATTGGGGCcaacagcagGATGCATTGGTTATGGAATGGCAAAGGCATCTGTACATCAGCTGTGTCAGAGTCTCAGTGCGCCAAACAGTGGTCTTCCTCTGGGATCTGCTGCTGTAGCAATCCTTCcAGTAACTTTGGATACACCCATGAATAGAAAGTTCATGCCAGATGCTGATGTCAGTTGCTGGACACCACTAGAGTACATAACAGAGCTGTTCTATAAGTGGACGACTGGAGAAAGCAGACCGCCTTCAGGTACTCTCATGCAGCTTGTTACTGCAGATGGAAAAACAGAAGCTACACCAATGCTGTGactagtataatataataaatggaaaaaaaaaacttcaaactaAGTCTATCGCTCAATACTGTTTCAGCACTGTTGATACTTCATCTTATTGTCTTTTTCGTTTACATGTAAAAATTAGAGTACTGTTACATTCTGGCTATTAAATATTgcgtactttaaaaaaaacaaatgtggttGGTTTGTAACTGTGGTCGGGAAAATAACCATGTTatgtttaaattgaataaatgtttCTTTTCTGTCCCA
>TCONS_00001950
GGCAGCTACAGATGCACAGAAAGTGATTGTTTACGGGGGAAAAGGAGCTCTGGGCTCGGCATGTGTGCAGTATTTCAAAGCTAAACACTGGTGGGTTGCCTCTATTGATCTCAGTGCCAATGAAGAAGCCAATGCCAATGTTACAGTTAAAATGACTGAGTCCTTCACTGAGCAAGCCAACCAGTTTTTCTCCTCAGGTAACGGCAGATGTTGGTGATCTGTTAGGTGAAGAGAAGGTTGACGCTATCTTCTGCGTGGCTGGAGGTTGGGCAGGGGGCAGCGCTAAGGCCAAAACTCTGTTTAAGAATGCTGATCTGATGTGGAAGCAGAGTGTATGGACCTCCACTATTTGTAGTCACCTAGCAACCAAACACCTGAGAGAGGGGGGGCTGCTCACACTGGCAGGGGCCAAAGCAGCATTGGGGCcaacagcagGATGCATTGGTTATGGAATGGCAAAGGCATCTGTACATCAGCTGTGTCAGAGTCTCAGTGCGCCAAACAGTGGTCTTCCTCTGGGATCTGCTGCTGTAGCAATCCTTCcAGTAACTTTGGATACACCCATGAATAGAAAGTTCATGCCAGATGCTGATGTCAGTTGCTGGACACCACTAGAGTACATAACAGAGCTGTTCTATAAGTGGACGACTGGAGAAAGCAGACCGCCTTCAGGTACTCTCATGCAGCTTGTTACTGCAGATGGAAAAACAGAAGCTACACCAATGCTGTGactagtataatataataaatggaaaaaaaaaacttcaaactaAGTCTATCGCTCAATACTGTTTCAGCACTGTTGATACTTCATCTTATTGTCTTTTTCGTTTACATGTAAAAATTAGAGTACTGTTACATTCTGGCTATTAAATATTgcgtactttaaaaaaaacaaatgtggttGGTTTG

Function

GO:

id name namespace
GO:0006729 tetrahydrobiopterin biosynthetic process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004155 6,7-dihydropteridine reductase activity molecular_function
GO:0070402 NADPH binding molecular_function
GO:0070404 NADH binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-320 Enables 6,7-dihydropteridine reductase activity. Acts upstream of or within brain development; gliogenesis; and glutamine metabolic process. Predicted to be active in cytoplasm. Is expressed in ciliary marginal zone; eye; midbrain hindbrain boundary; optic tectum; and retina. Human ortholog(s) of this gene implicated in phenylketonuria. Orthologous to human QDPR (quinoid dihydropteridine reductase).

Ensembl:

ensembl_id ENSDARG00000037378

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001949 False 1025 mRNA 0.44 7 22845225 22851481
TCONS_00001950 True 912 lncRNA 0.45 7 22845289 22851419

Neighbor

gene id symbol gene type direction distance location
XLOC_001216 ldb2b coding downstream 10401 22805398 ~ 22834824 (-)
XLOC_001215 tapt1b coding downstream 42078 22770255 ~ 22803147 (-)
XLOC_001214 prom1b coding downstream 88080 22712931 ~ 22757145 (-)
XLOC_001213 fgfbp2b coding downstream 154043 22685961 ~ 22691182 (-)
XLOC_001212 fgfbp1b coding downstream 166754 22677429 ~ 22678471 (-)
XLOC_001218 SMIM18 coding upstream 6272 22857753 ~ 22861348 (-)
XLOC_001219 adgrl3.1 coding upstream 92070 22943551 ~ 23157583 (-)
XLOC_001220 rfc1 coding upstream 391612 23243093 ~ 23274504 (-)
XLOC_001221 ugdh coding upstream 432051 23283532 ~ 23294753 (-)
XLOC_001222 smim14 coding upstream 446142 23297623 ~ 23308308 (-)
XLOC_001211 FP245458.1 non-coding downstream 170612 22663723 ~ 22674613 (-)
XLOC_001205 CR388092.1 non-coding downstream 653158 22191952 ~ 22192067 (-)
XLOC_001204 NA non-coding downstream 844175 21999781 ~ 22001050 (-)
XLOC_001199 CR786570.1 non-coding downstream 1164747 21680364 ~ 21680478 (-)
XLOC_001189 BX323083.5 non-coding downstream 1829295 21010689 ~ 21015930 (-)
XLOC_001224 NA non-coding upstream 565434 23416915 ~ 23436608 (-)
XLOC_001225 NA non-coding upstream 594004 23445485 ~ 23447300 (-)
XLOC_001229 NA non-coding upstream 900472 23751953 ~ 23783769 (-)
XLOC_001230 NA non-coding upstream 1057236 23908717 ~ 23911006 (-)
XLOC_001234 NA non-coding upstream 1750851 24602332 ~ 24606762 (-)

Expression


Co-expression Network