XLOC_001214 (prom1b)


Basic Information

Item Value
gene id XLOC_001214
gene name prom1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 22712931 ~ 22757145 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001943
CCGAAGAGAAAGATGTTTACCATGATGCCGTCAGAAGGATACGGGGAATAAACGAATCACTTGGAATAcctttttacttttgtttgttttctatcttttattattatgtgtCCCGGATTaattttgtgtcatttttaatttttcatgtCGAGGACTAGAGAGCGACCCAAACAAATATACTTTTCTCACACCTAATCCGTCCTCCCCTTTTTTCCCTATCAAAATCCTCCGGCAGAGACTGATGGACATGTGGTGGAAAGTGGGACTCGTGCTGGTGATGTTTTGGGGTCTCACAAGCAGCGAAGACCGCGAGGAGCACCGGGAGTCCCCGCCGCGCACAGCGATGCTCCGAGCGCCCGTGGAAACGCTGGACTTTGGCTTTGTGCCGTCGGTGGTGTACGAGACACACGCGTATTATGAACCAGGTCCCATGGGGATTCTTTTCCACATGGTCCACGCGTTTCTTTACGTGGTTCAGCCAAACCCCTTCCCCAAAGATCTCATTGTTAAAATGGTGCAGCAGAACATGGGAGGAATTAAAGGAGATGATTACAAAAAGCCAGAGAATGTTGTACTATTACTTCAGACTATCTATTATGAGCTGGGCTTTATAGTGCTGTCAGTGCTGGGGGTGTTTTTTGTGCTCCTCATGCCAATAGTGGGTCTGTGTTTCTGCGTGTGCCGCTGCTGTGAGAACTGTGGTGGCGAGATGCATCAGAGACAGAAGAAGAATGGAGACTGCCTGCGTGGATTTTACATGGCCACACTCATCGCTACCTCTGTCTTCCTCGCAGTTGGAGTGACAGTCGCCTATGTAGCAAACCAGAACATCACATCTCAGATTAAAAGCACCAGGCGACTTGTGAGCACTAACATAAGAGACCTGAAAGCTTTTGCCAACTACACACCTGCGcAAATAGACTACCTCACTGCACAGTATACAACAGCCAAGAATAAAGTATTATCAGACTTAGACAATATCGGGACTCTGTTGGGTGGACAGATTCATAATAAGCTGGAGAGTGAAGTGGTGCCTGCATTAGACCATGCTCTTCGCATGACAGCAGCCATGCGGGAAACCAAAGAGTCATTAGAGAGTGTGAGCACATCTCTAGAGACCCTGCAGGAGGGAACAGGCAGACTTCAGGTCTCTCTTCAGTCTGAACGAGTgtctctctcaaacacactcaATGACTGGGCATGCTCTAATGAAGACGTAACACACACTTGCAACTCCATCCGCGGGACCCTCAACCAACTCGCTCTCAGTGCAAACTTCAATGGGTTGCCCGATGTTGAGGCACCTTTAGCCAATCTGGATGCTGTGCTTAAAACAGACCTCAGTAATATTGTTCAAAAGGGCTACTCTTCTTTTAACGACACACCACAGTTGGTAAGGGAACAGACTAAAGGGATTGTGTCAGCTCTACCCAAAGTGAAAGGGCTGCTGGATAAATCAGGTGCAGAGATTATTGGTTTCACAAAGATGTTCCCGGTTGAGCCAGCACTTCAAAACTTCTCAAAGTTCCTGACAGACAGCCAGAAGAATATTGAAGCATACTATCCACAGATCGACCAGCTGGACTTCTACAGATGGATCGGGTGTGTGTTGATCTGCTGTTTGGTTGTGCTGGTTCTGGCTTTTAATTTTCTGGGTCTGTTGTGTGGATCATGTGGCTATGATAAAAACTCCACTCCAACCACACGGGGCTGTTTGTCCAACACTGGAGGAAACCTGCTGATGGCTTCTGTTGGCTTCAGCTTCATCTTCTCCTGGGTgctcatgggagttgtggtcacAACATTTATTGTTGGTGGAAACATTGAAAAGCTTGTGTGCGAGCCACTGGCTAACAGACAGATTTTTAAGATTATTGATACACCATACATGGTCCATCCGACCAAAAAAAACTTCCTTCCTGGCATGTTGTTTCAAGATCCCAACATCGATCTGACTATTGGCAGTATGTACAgAGATTGTTACGAGAATAATGGTTTATATTCAGCTCTACAACTGGAGACCAAATTCAACTTTAACAAGTTTCTCAATGCCACAGTGTTCAACCCTGAAATTGGCgatatatttaataatgtaaatgtgGATCTGCAAGGAATGCTTCTTCTGGAACAGGAGGGTAAAGACAATCTCATCGACTTTGCCAACACAGGCATTGGAGACATTGACTACCAGGCTTATTTAACAGAGGTGAATAAAGGAGTGACAGTTGTGGATCTATTGTCCTATGCAAATGAACTCGATGCTCAAGCAGATAACCTGCCACGCGGGGCTCTTGAGAATGCACTGAAAGGTCATGCCAGCAGTATCAGACAAATCCACAAAGATCAAGTGGTTCCAATGGAACAGGCTATgAGCAATTTAAATCAAAGCATCAGACAATTGGAGAAAACATCCAGAGAGCTGCCTGTTAAAGTGACAAATGTACTGAATGCCATCGAGGCAGCAGAATATCTCATCTCCAACAATGCCTCACATGTGGTCAAACAGGAGTCTGATAAATTCATTAAGAAAATTATTGGATACTTTTCCCAATATACGGAGTGGGTTAAACACTCACTGGCAATGGAGGTCGCCCAGTGCAAACCTATCAGCAACATTGTGGACTCAGCAGAGATTGTAGCCTGCAGCTTCATTGTTGATTCAGTGAACACATTCTGGTTTGGTCTGGGAGGATGTTGTGTGCTCCTCATTCCCAGCATCATCATGTCAGTAAAACTCGCCAAATTCTACCGCAGGATGGACACTGAGGATGTCTTTGATGATGGTTCTGAGAACTGGAGCTAAAGACAATGTAGCATGtcaagagATTGTCTTTGTTCATTCGGATTCTAAGGACAACAAACAAAGACAGGCATAAAGGGAATATTATCAGCAAAATGAAATGATCAAATCTTTATTTCAGTCTCAAAGATTAAATCATGTTCAGACCTTAACTGAAGAATTTCCAGCATATTCACCACACAGGCAAACAGCAgtctaatctttttttattttacactttcaACAAGTTTATGAAAGTTTTGTACGTATTTTGTTAATATCTGTTTTATAAAACATGTCCTTTAGACACAACTGTGGGTTCATCTAGATTTTGTATCGgtctttttaacattttaaagcaggAGTGAGAAAGATCGGTGGTGATTGTTGATGATGAAATGATGTTTCTGAACCAAACATCAGAAAGATTGATCAAAGCAGCTGAAGTATTTACCTAGAAAAGTACTTCATTTATCAAGTTCTTTTGTGAAATGTTACCTTTTTCTACATTCTATTGTCCAACGAATGAAGTAGAAATTAGTCAAATAAAAAACTGTTTGCACTAGAAACGCACTAGACAACGCTCATGTATTTACAGACAAATGATCTGAAGCCAACATCCTAAAAGACTGATCCTGTATGTTGGAAATGTCAGTACTTTTGATACAAGATAATTATGCTACTAAACACAAATGACTACTGTAGAGCAGTTggacaattttgtttttgttgtatttgttttcatgtttttgagTGTCTTACTTTTTTGTGTCCACATTGAATTGAAAATAGTTACTTATGTCCATTGTAATCGTAATGTACTGTCATTTCTTGAAATGCATGTTTCAGTACAGCATACAAATGTCATGAAATTCAAaccaaaggtttttttttttcccttataTTCTAAAAAGCAAGGTTTGTGAATGAAAGCTGGAATCTTATTGTGTCTGATATTCACGAACATCTCTTTCTCTCGTGGGTTTTGTTGTTCTCACATTTTTACACTCATTGTACTATTTGGGATTTTGCAGTGTGCAACATGACAATGTAATCTCACTGTTACATGGAGGACGAATGAAAGTTACAATAAAACAATCAGCTTA
>TCONS_00001944
ATGTGGTGGAAAGTGGGACTCGTGCTGGTGATGTTTTGGGGTCTCACAAGCAGCGAAGACCGCGAGGAGCACCGGGAGTCCCCGCCGCGCACAGCGATGCTCCGAGCGCCCGTGGAAACGCTGGACTTTGGCTTTGTGCCGTCGGTGGTGTACGAGACACACGCGTATTATGAACCAGGTCCCATGGGGATTCTTTTCCACATGGTCCACGCGTTTCTTTACGTGGTTCAGCCAAACCCCTTCCCCAAAGATCTCATTGTTAAAATGGTGCAGCAGAACATGGGAGGAATTAAAGGAGATGATTACAAAAAGCCAGAGAATGTTGTACTATTACTTCAGACTATCTATTATGAGCTGGGCTTTATAGTGCTGTCAGTGCTGGGGGTGTTTTTTGTGCTCCTCATGCCAATAGTGGGTCTGTGTTTCTGCGTGTGCCGCTGCTGTGAGAACTGTGGTGGCGAGATGCATCAGAGACAGAAGAAGAATGGAGACTGCCTGCGTGGATTTTACATGGCCACACTCATCGCTACCTCTGTCTTCCTCGCAGTTGGAGTGACAGTCGCCTATGTAGCAAACCAGAACATCACATCTCAGATTAAAAGCACCAGGCGACTTGTGAGCACTAACATAAGAGACCTGAAAGCTTTTGCCAACTACACACCTGCGcAAATAGACTACCTCACTGCACAGTATACAACAGCCAAGAATAAAGTATTATCAGACTTAGACAATATCGGGACTCTGTTGGGTGGACAGATTCATAATAAGCTGGAGAGTGAAGTGGTGCCTGCATTAGACCATGCTCTTCGCATGACAGCAGCCATGCGGGAAACCAAAGAGTCATTAGAGAGTGTGAGCACATCTCTAGAGACCCTGCAGGAGGGAACAGGCAGACTTCAGGTCTCTCTTCAGTCTGAACGAGTgtctctctcaaacacactcaATGACTGGGCATGCTCTAATGAAGACGTAACACACACTTGCAACTCCATCCGCGGGACCCTCAACCAACTCGCTCTCAGTGCAAACTTCAATGGGTTGCCCGATGTTGAGGCACCTTTAGCCAATCTGGATGCTGTGCTTAAAACAGACCTCAGTAATATTGTTCAAAAGGGCTACTCTTCTTTTAACGACACACCACAGTTGGTAAGGGAACAGACTAAAGGGATTGTGTCAGgtatacctaAAGTGAAAGGGCTGCTGGATAAATCAGGTGCAGAGATTATTGGTTTCACAAAGATGTTCCCGGTTGAGCCAGCACTTCAAAACTTCTCAAAGTTCCTGACAGACAGCCAGAAGAATATTGAAGCATACTATCCACAGATCGACCAGCTGGACTTCTACAGATGGATCGGGTGTGTGTTGATCTGCTGTTTGGTTGTGCTGGTTCTGGCTTTTAATTTTCTGGGTCTGTTGTGTGGATCATGTGGCTATGATAAAAACTCCACTCCAACCACACGGGGCTGTTTGTCCAACACTGGAGGAAACCTGCTGATGGCTTCTGTTGGCTTCAGCTTCATCTTCTCCTGGGTgctcatgggagttgtggtcacAACATTTATTGTTGGTGGAAACATTGAAAAGCTTGTGTGCGAGCCACTGGCTAACAGACAGATTTTTAAGATTATTGATACACCATACATGGTCCATCCGACCAAAAAAAACTTCCTTCCTGGCATGTTGTTTCAAGATCCCAACATCGATCTGACTATTGGCAGTATGTACAgAGATTGTTACGAGAATAATGGTTTATATTCAGCTCTACAACTGGAGACCAAATTCAACTTTAACAAGTTTCTCAATGCCACAGTGTTCAACCCTGAAATTGGCgatatatttaataatgtaaatgtgGATCTGCAAGGAATGCTTCTTCTGGAACAGGAGGGTAAAGACAATCTCATCGACTTTGCCAACACAGGCATTGGAGACATTGACTACCAGGCTTATTTAACAGAGGTGAATAAAGGAGTGACAGTTGTGGATCTATTGTCCTATGCAAATGAACTCGATGCTCAAGCAGATAACCTGCCACGCGGGGCTCTTGAGAATGCACTGAAAGGTCATGCCAGCAGTATCAGACAAATCCACAAAGATCAAGTGGTTCCAATGGAACAGGCTATgAGCAATTTAAATCAAAGCATCAGACAATTGGAGAAAACATCCAGAGAGCTGCCTGTTAAAGTGACAAATGTACTGAATGCCATCGAGGCAGCAGAATATCTCATCTCCAACAATGCCTCACATGTGGTCAAACAGGAGTCTGATAAATTCATTAAGAAAATTATTGGATACTTTTCCCAATATACGGAGTGGGTTAAACACTCACTGGCAATGGAGGTCGCCCAGTGCAAACCTATCAGCAACATTGTGGACTCAGCAGAGATTGTAGCCTGCAGCTTCATTGTTGATTCAGTGAACACATTCTGGTTTGGTCTGGGAGGATGTTGTGTGCTCCTCATTCCCAGCATCATCATGTCAGTAAAACTCGCCAAATTCTACCGCAGGATGGACACTGAGGATGTCTTTGATGATGGTTCTGAGAACTGGAGCTAA
>TCONS_00001945
CAGTTGTGGATCTATTGTCCTATGCAAATGAACTCGATGCTCAAGCAGATAACCTGCCACGCGGGGCTCTTGAGAATGCACTGAAAGGTCATGCCAGCAGTATCAGACAAATCCACAAAGATCAAGTGGTTCCAATGGAACAGGCTATgAAATTTGTGAAAGCAAGGAGCAATTTAAATCAAAGCATCAGACAATTGGAGAAAACATCCAGAGAGCTGCCTGTTAAAGTGACAAATGTACTGAATGCCATCGAGGCAGCAGAATATCTCATCTCCAACAATGCCTCACATGTGGTCAAACAGGAGTCTGATAAATTCATTAAGAAAATTATTGGATACTTTTCCCAATATACGGAGTGGGTTAAACACTCA
>TCONS_00001946
CAGATTCATAATAAGCTGGAGAGTGAAGTGGTGCCTGCATTAGACCATGCTCTTCGCATGACAGCAGTTAAAGTGGAGAGTGCTATTAAAGCCATGCGGGAAACCAAAGAGTCATTAGAGAGTGTGAGCACATCTCTAGAGACCCTGCAGGAGGGAACAGGCAGACTTCAGGTCTCTCTTCAGTCTGAACGAGTgtctctctcaaacacactcaATGACTGGGCATGCTCTAATGAAGACGTAACACACACTTGCAACTCCATCCGCGGGACCCTCAACCAACTCGCTCTCAGTGCAAACTTCAATGGGTTGCCCGATGTTGAGGCACCTTTAGCCAATCTGGATGCTGTGCTTAAAACAGACCTCAGTAATATTGTTCAAAAGGGCTACTCTTCTTTTAACGACACACCACAGTTGGTAAGGGAACAGACTAAAGGGATTGTGTCAGCTCTACCCAAAGTGAAAGGGCTGCTGGATAAATCAGGTGCAGAGATTATTGGTTTCACAAAGATGTTCCCGGTTGAGCCAGCACTTCAAAACTTCTCA

Function

symbol description
prom1b Predicted to enable cholesterol binding activity. Acts upstream of or within photoreceptor cell outer segment organization. Located in apical plasma membrane. Is expressed in nervous system; otic vesicle; and testis. Human ortholog(s) of this gene implicated in cone-rod dystrophy 12 and retinitis pigmentosa 41. Orthologous to human PROM1 (prominin 1).

GO:

id name namespace
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0071914 prominosome cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0005902 microvillus cellular_component
GO:0005929 cilium cellular_component
GO:0009986 cell surface cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0015485 cholesterol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031003-1 Predicted to enable cholesterol binding activity. Acts upstream of or within photoreceptor cell outer segment organization. Located in apical plasma membrane. Is expressed in nervous system; otic vesicle; and testis. Human ortholog(s) of this gene implicated in cone-rod dystrophy 12 and retinitis pigmentosa 41. Orthologous to human PROM1 (prominin 1).

Ensembl:

ensembl_id ENSDARG00000034007

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001943 False 3885 mRNA 0.42 26 22712931 22757145
TCONS_00001944 False 2556 mRNA 0.46 25 22714112 22756898
TCONS_00001945 False 371 mRNA 0.42 6 22720988 22726233
TCONS_00001946 True 546 mRNA 0.47 7 22730373 22735924

Neighbor

gene id symbol gene type direction distance location
XLOC_001213 fgfbp2b coding downstream 21749 22685961 ~ 22691182 (-)
XLOC_001212 fgfbp1b coding downstream 34460 22677429 ~ 22678471 (-)
XLOC_001211 FP245458.1 coding downstream 38318 22663723 ~ 22674613 (-)
XLOC_001210 uchl1 coding downstream 60507 22647756 ~ 22652424 (-)
XLOC_001209 chrnb5a coding downstream 118593 22542457 ~ 22594338 (-)
XLOC_001215 tapt1b coding upstream 13110 22770255 ~ 22803147 (-)
XLOC_001216 ldb2b coding upstream 48253 22805398 ~ 22834824 (-)
XLOC_001217 qdprb1 coding upstream 88080 22845225 ~ 22851481 (-)
XLOC_001218 SMIM18 coding upstream 100608 22857753 ~ 22861348 (-)
XLOC_001219 adgrl3.1 coding upstream 186406 22943551 ~ 23157583 (-)
XLOC_001205 CR388092.1 non-coding downstream 520864 22191952 ~ 22192067 (-)
XLOC_001204 NA non-coding downstream 711881 21999781 ~ 22001050 (-)
XLOC_001199 CR786570.1 non-coding downstream 1032453 21680364 ~ 21680478 (-)
XLOC_001189 BX323083.5 non-coding downstream 1697001 21010689 ~ 21015930 (-)
XLOC_001224 NA non-coding upstream 659770 23416915 ~ 23436608 (-)
XLOC_001225 NA non-coding upstream 688340 23445485 ~ 23447300 (-)
XLOC_001229 NA non-coding upstream 994808 23751953 ~ 23783769 (-)
XLOC_001230 NA non-coding upstream 1151572 23908717 ~ 23911006 (-)
XLOC_001234 NA non-coding upstream 1845187 24602332 ~ 24606762 (-)

Expression


Co-expression Network