XLOC_001220 (rfc1)


Basic Information

Item Value
gene id XLOC_001220
gene name rfc1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23243093 ~ 23274504 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001958
ctctctctctccatctgcgCGTCATCACACTGCGCCTCCCTGTTGATTATCATTGGCGCCAAAGAGGATTGGAGAAGCACTACCTGCCCGCAGCTTgtccaaaaataaagaaaatattttgacatATGATTAGCAATGGACATCCGGAGGTTTTTTACGTCCACCAAGCCTGTGGCCCAGAAAGCTTCAAATGGAAGCACAAGCACAAGTACTGATGAAGAGCAGAAGAAGAAACAAAAATCAAGACCTAAGgtCAAAAGCCCCAAATCTGATGAGAAACCCAGcgggaaaagaaagaaaagagttATAGTTGATTCAGACTCTGAAGAAGAGAAGAAGGTAAAGACCAAAAAGAGCACTAAAGAGACTTCTATCCCCACAGAGAAGAAACACCCAGTAACTTATGTGTCTGATTCTGATTCGGATGGAACATTTGAGACTCTGAAAAAGCCCAAACCTAAAGAGAATGGAACGGCTAAAGGCAAGAAGGAATCAgattcaggaaaagcaaaacaagtgAAAGTCTCCTCCAGCAAATCCCCAGTCAAATCCCCCAGCACGGTGAAGGGAGGGGTGAAGAGTTCTCAACCCACCGTTTCCCCTAAGGTGGCACCAACCCCACCAAAACAGATGCCCACATCAGTAATGGCTTTTTTTGGGAGTTCAAGTGTTCAGAGGTCGGAGAAGAAAATGGTGGCCAGTAGCAGCACTAAGAGGAAGGCACCACTGGAAACTGATGAGTCACTCAGTGATGAAGCCATTGCAAAAGAACTTCAGATGGATGAAGACAAGGAGCTGGAAAAGCAGATTCATGATGATGAGGAATTTGCTAGGACATTAGCCATGCTGGATGATGCTCCCTTACCAAAAAAGGCTCGGGTAGACTCTATCTCCCCATCCAAGAGCAGCTCTCAGGCGATTGCCTCGGACATCAAGCCCAAAAAGGACTTGTCCCCTAAAACAAGTCCTGTGAAGACCAGCTCCAAACTGGCTCAAATGAAAAGACGCCAAGAAGAACGGGACGAGCAAGGGAAAAAAGACAAAGGTGAAAAGCAGATTAAGATCTCTCCTAAGAAAGAGCCCATCTCTCCGACTAGCTCAGAGCGTGCAGCTACGCCAAAAACAGCAAGTGCTTCTGCAGGAATGGCAAAATCAAGAAATTTGTCCACACCTAAAAGTGAAAGTGTCCCCAGTAAAACCTCACCAACCAAACCAGAGAATACAAGTCCAGATGACCTGGAGAAAAAACGGGCAAATTCATCAGCCTACCGTAGCTATCTGAACAGAGAAGGACCACGAGCTCTGGGCTCTAAAGACATACCACAGGGCGAAGAGAACTGTCTGGagggctgtgtgtttgtgttgactGGTGTTTTGGAGTCTATGGAGAGGGATGAGGCTAAATCACTAATAGAGCGATATGGCGGGAAAGTGACAGGAAACGTCAGCCGTAAAACCACTTACCTTGTTCTGGGACGAGACAGCGGAGTCTCAAAGACTGAGAAGGCGGAAAGTTTCGGCACCAAGATTATTAATGAAGATGAGTTATTGGATCTCATAAGAACCAAACCAGGCAAGAAGTCTAAATATGAGATTGCAGCAGAAGCAGAGAATAAATCCTCTAAAACAAGGACTCCAGACTCCAGAGGCAAAGTCGCTTCTTCAGCCAAGAAGGCCACACCACAAGGGCCAAGCCCAAATAAGAGAAGCTCTTCAGGGGGAAAGTCTAAGCCTGGATCTGCCTCTAAATCTGGAGCCCGTGGGGCCTCTTGTTCAGAGGTCAAAAAGAGCTTGAGCTTTGATCAAACAAAGACAGCATCCCCTGTATCCCACTCTGCCCCAGAGAATGATGGAAGCAGCCTGTTGTGGGTGGATAAGTACCGTCCACGCAGTCTAAAAAACCTGATTGGACAGCAGGGGGATCAGAGTTGCGCTAACAAGCTCTTACGTTGGCTACAGAGCTGGCATAAACACCACAGTGGCAATGCAAAAGCACCAGcACCCAAATTTGGTAAATTTGGGAGTAAAGATGACGGTTCTGGATTTAAGGCTGCATTGTTATCTGGACCCCCTGGTGTTGGGAAGACCACTACTGCTGCTCTCGTTTGTGAGGAGTTGGGTTACAGCTATGTGGAGATGAATGCGAGCTGCACCCGCAGTAAGAACAGCTTAAAGGAGGTCATCGCAGAATCACTTAACAACACCAGCATTAAGAACTTCTACACCGGTGCATCACAGACAGTGAGCAGTAAACACGTTCTTATAATGGACGAGGTGGACGGCATGGCAGGAAATGAAGACAGAGGAGGAATACAGGAGATGATTGGTCTGATAAAACAGTCAAAGATTCCCATCATCTGTATGTGTAATGACCGCAATCATCAGAAGATCCGCTCGCTGGCCAACTATTGCTATGACCTGCGCTTTCAGAGACCCCGCGTTGAGCAGATCAAGGGAGCTATGATGTCTATAGCTTTTAAGGAGGGTTTGAAGATTCCACCCCCAGCACTTAATGAAGTCATCCTAGCATCCAATCAGGATATCCGACAGGTGCTGCATAATCTGAGCATGTGGTCAGCTAAAGACAAAGTTATGACCTATGACCAGGCCAAAGCTGATGCTAACAATGCTAAGAAGGACATGAAACTAGGTCCATTTGATGTTTGTCGAAAGGTGTTTGCTTTAGGAGAGGAAACAGCTCACATGTCTTTGATCGACAAATCAGACCTTTTCTTTCATGATTACTCTTTAGCACCACTCTTTGTCCAAGAAAACTACCTGCATGTCCGACCAGCCGCTGCAGGGGGAAATCTGAAGAGTCATTTGGTGTTGCTGAGTAAAACGGCGGACAGCATTTGCGATGGAGATTTAGTGGACAGACAGATTCGCTCTAAACAGACTTGGTCTCTGCTTCCCACACAGGCGATCTATGCAAGCGTGTTGCCAGGGGAACTGATGCGTGGTTACATGAGTCAGTTCCCAAACTTTCCAAGCTGGTTGGGCAAATTTTCCTCATCGGGCAAACACAGCCGCATCATACAGGAGCTGGCCTCACACATGAGCCTCAAGACCTTAAGTAGTAAGGAAGCAGTAAATCTGGATTACCTGCCCTATTTGCGCTCAGCAGTATTAAAACCTCTTCAGTCCCTAGGCTCAGAGGGAGCCAATCAGAGCGTGAAGCTCATGGATGATTATGACATCATTAAAGAGGATGTTGATAACATGATGGAGATCAGCACATGGGATGGACAGCCGGATCCGTACTCTAAACTAGACtccaagGTGAAAGCTGCGTTTACAAGAGCCTACAACAAAGAATCTCATCTCACGCCATACTCCTTACAAGTGGTGAAGAAAAGTCGTAAAGGTGCAGTTGACCCTGAGCTTCTAGGAGAGCTTGACAATGAATCTCAGGTGCAGGAAGAGGAAGAAGATGATGGGCTTGGTGCAGATGCAATGATAAAGCAGAAAAAGTCCAAACCAGCAAAAGAAACCAAACCAGCAAAAGATGTTAAGAAAGAGAAACCAGGGCCTTCTGGGAAGGGGAAAGGCCGGGGTAAAGGAAAGACCAAGAACTGAGATAAACAGGAGGGACTGAGAGACAGAAAGGCCTCGTTTCCCCCTGTTTTCATAAAGATGTGAGTGGCTGAATGACATCAGCTCTATAAACAGAACTTTTGTATGTGTGAGTCATACTTGTGCACTTCCTTAAAGCCATCACTCAGCTTAAGCAGACGCTGGACCACACATTCTCCCACTCCACTTCTTATATTGTTCACAATTCATCAAGCATATCAGACTGAACGCATGCATCATACTGTTCACACATAGTGCTAAAGCTTTATTCGTCTCAAAGGTAAACCGTATATTAAGGGCACTTAATGTCATCTCACTCATGTAACCCTCATGACAAAAAACATGAGCATTTTAATGTGTTAGTGTCTGATTCTCGCAGCCTTTTCACTCACTAAACATGCCAATCCACTGTACTTGGTGACCACACATACAATGTAAATATCTGCCGTATTTCTTTGGATGTTACTTCTAATACTTGCAGATTTATAGATATATAAACGATCGCTTTCTTAGTGTTTTCTATGACAGCACTTTTGGATACAGTCTGATAGTGTGTGATATTAGCCTGAAGATTATTCTGTACATG
>TCONS_00001959
ATCCATGCGGTTACAATGCTACTTGCTCTGCACTGCACGTTTTGTAGCTTATGTAATtttaaagtaaacaataaaataaaaatgaaataaactgtgtgtttatatagtaaagcccgaaattattcatacctctggcaaattctgacttagcAAGTTTTTCAAGGGACCTTAAGACGATGCACATCGAGAGACATCATTCTGTAAACAAATGTTTCTCACCTCTTATTTACATTTGAAGAAAACTGCACTagtgtatgaataattttgggcttgcctgtgtgtatgGACATCCGGAGGTTTTTTACGTCCACCAAGCCTGTGGCCCAGAAAGCTTCAAATGGAAGCACAAGCACAAGTACTGATGAAGAGCAGAAGAAGAAACAAAAATCAAGACCTAAGgtCAAAAGCCCCAAATCTGATGAGAAACCCAGcgggaaaagaaagaaaagagttATAGTTGATTCAGACTCTGAAGAAGAGAAGAAGGTAAAGACCAAAAAGAGCACTAAAGAGACTTCTATCCCCACAGAGAAGAAACACCCAGTAACTTATGTGTCTGATTCTGATTCGGATGGAACATTTGAGACTCTGAAAAAGCCCAAACCTAAAGAGAATGGAACGGCTAAAGGCAAGAAGGAATCAgattcaggaaaagcaaaa
>TCONS_00001960
GTTGATTATCATTGGCGCCAAAGAGGATTGGAGAAGCACTACCTGCCCGCAGCTTgtccaaaaataaagaaaatattttgacatATGATTAGCAATGGACATCCGGAGGTTTTTTACGTCCACCAAGCCTGTGGCCCAGAAAGCTTCAAATGGAAGCACAAGCACAAGTACTGATGAAGAGCAGAAGAAGAAACAAAAATCAAGACCTAAGgtCAAAAGCCCCAAATCTGATGAGAAACCCAGcgggaaaagaaagaaaagagttATAGTTGATTCAGGTTCATATTCAGAGTTGATTAAACATTGATAATCAG
>TCONS_00001961
AATGAAGACCATTCTCAGTAACCAGACAGTGGACATCCCTGACAATGTCACGGTGTCCCTCAAGGGCCGCACAGTTACCGTGAAGGGACCCCGTGGTGTTCTCCGCCGGGAGTTCAACCACATTAACCTGGAACTCAGTCTGTTGGGcaaaaaacagaaaaagctGCGTGTGGATAAGTGGTGGGGTAACAGAAAGGAGTTGGCCACCGTCCGCACCATCTGCAGTCATGTCCAGAACATGATCAAGGGTGTCACCCTGGGCTTCAGGTACAAAATGCGATCTGTATATGCCCATTTTCCCATTAATGTGGTCATCCAAGAGTCTGGCTCTCTGGTGGAGATCAGAAACTTCTTGGGAGAGAAGTACATCCGCCGTGTCCGCATGAGGCAAGGAGTTGCATGTGCAGTGTCTGCCGCTCAAAAAGACGAGTTGGTTCTGGAGGGTAATGATATTGAGCTGGTGTCAAACTCAGCTGCTCTGATCCAGCAGGCCACCACTGTGAGGAAGAAGGACATCCGGAAGTTCCTGGATGGGATTTATGTCAGCGAGAAGGGCACAGTGGTGGAACAGCAAGAGGACTAAATTAGTCTCTGTAAAATCTGTCAATAAAGACCAACTCCATTTTTCAATCATATATGTGTGCAGGAGTTTCATTCATGTTGATACTGTCTAGTTTCATGAAAGTCTTTAGTTAATGAGGGTTAATGTGCATGTAGTAGAATATGAGCTACGTGTATTGGAAAAACTTGATCGCATTCTTTTGTATTCACTGTTTTTTGGTCCAGGTGTAAAAGTATGTTTTAGTTTCTTGTATATAAAACAATACACAATCTAATGAATTAACATTTTAGAATGGACGCAGCCTGCCCTCGGCTCAGTAGAATTTACAAAGTAAAGCACAAAAAGAAATGATGAAAGCATGTCATCATTGAATTGCAAatatccaaaaaacaaaaataagggTCTGTGTAATCTAAAGCATTCTAAGAGCAGTTTTTAAGGATTTGAAATAGCTGTGTGTGGTCTGTCCTGAACATGCAAACGTCCACATGGCAGGTGTTTTGCTTTTTGTGTATTTGGCCCTTTTTCAAATCGTACTAAATGATTCACAGAGCATGAAGATCAGTAGTAGGATTTGCTTTCAAAAAGTTAAAGGTAGTCAGAGGTTAATACTTTTACTTTTTCCTAGAATTGGAATTTATTTACCTCAATTATCTGATTTACATCTTCGCATTTCTGCTTTTAATGCATTGTGTTGCCATCTTAAccagtgtttatttatatatatatatatatatatatatatatatatatatataatatcgtGGAGATGATTGCATTCAAATAAATTTTCTATAGTATTAAGTTGCCCAATAATCTTAACAAATAGTTGTATAAAGTCTTACATCTGTGCATGGAACATCCGCATAACCCAAATAAAGGCATCACTGCAGGATATTTAGGAAAGcgcaaaaacttttaaaagtttttttaaagcgTGTATTTGGTCATCTGCTGCGAAAACATTTGAAGAATTACTACAGGtcctgaaaaaacaaacatttatataataaagGATTAATTACATGTTGTGATTCAGTTTGTAACATTGATCAATGATTTCTCACAATTCACAGCTGGCGGGGTAGTATCATTTcaccaactttaaaatatttattttaaaatttaattttactaTGTGCAGTTttaagaaggaaggaaggaaagattAGCATGTGCGCTGTCTCTGCATCTGCTGCGTGCGTTtgtctccctccctctctctctctctctctctctccatctgcgCGTCATCACACTGCGCCTCCCTGTTGATTATCATTGGCGCCAAAGAGGATTGGAGAAGCACTACCTGCCCGCAGCTTgtccaaaaataaagaaaatattttgacatATGATTAGCAATGGTGAGTCGCTTCATTAATGCACTGTATGTAGAAGTAAAGACACAATCAGAGACGAGGTCGGTGTAGCTgatcaagctgaaataaaagcagctcGAACTTGCAGCCTTTTTAACGTTACTTGTTAATTAGCAGATTAACTTAggctacaaaaataataaatcatatatagGCTATTTATGAATTTTGAAGTCCGTGTTTGCGTCGTTTGTTTTTAAGCCTTGGTTGTTTACGCCATGGTTGAGAAACATAAAAAGTGTGAATAACTTAATGATCAAGATCAACTGTCTTTGTCAACAGCAGACAGTCAATATGAGCTTCAGTTTTTCATATATAAGTTAACTACAGGTGTTTGTGCTTTACCACCTGCTTCCTGTTTGTTATTGTCGACTTTGAAATGTAAACAGTCAACAACAAATTCATCCATGCGGTTACAATGCTACTTGCTCTGCACTGCACGTTTTGTAGCTTATGTAATtttaaagtaaacaataaaataaaaatgaaataaactgtgtgtttatatagtaaagcccgaaattattcatacctctggcaaattctgacttagcAAGTTTTTCAAGGGACCTTAAGACGATGCACATCGAGAGACATCATTCTGTAAACAAATGTTTCTCACCTCTTATTTACATTTGAAGAAAACTGCACTagtgtatgaataattttgggcttgcctgtgtgtatggtatgtatgtatatgtatgtttgtttgtttgtgtgtacacATGTTCGCAAGTCTCTAATTCAGCAATGCTCATTTCAGGACATCCGGAGGTTTTTTACGTCCACCAAGCCTGTGGCCCAGAAAGCTTCAAATGGAAGCACAAGCACAAGTACTGATGAAGAGCAGAAGAAGAAACAAAAATCAAGACCTAAGGTAAAATGACATGTGAACAACATTCATTTGCATGCTGATGTTGTGTGCATCGTGCAGTGTCATAgagtctctctttctttctttctttaggtCAAAAGCCCCAAATCTGATGAGAAACCCAGcgggaaaagaaagaaaagagttATAGTTGATTCAG
>TCONS_00001962
ACATTTACGTCATGACGTTCTTCCTCCTTCCTTTCCCCCTTAATCGGCGAGAATGAAGACCATTCTCAGTAACCAGACAGTGGACATCCCTGACAATGTCACGGTGTCCCTCAAGGGCCGCACAGTTACCGTGAAGGGACCCCGTGGTGTTCTCCGCCGGGAGTTCAACCACATTAACCTGGAACTCAGTCTGTTGGGcaaaaaacagaaaaagctGCGTGTGGATAAGTGGTGGGGTAACAGAAAGGAGTTGGCCACCGTCCGCACCATCTGCAGTCATGTCCAGAACATGATCAAGGGTGTCACCCTGGGCTTCAGGTACAAAATGCGATCTGTATATGCCCATTTTCCCATTAATGTGGTCATCCAAGAGTCTGGCTCTCTGGTGGAGATCAGAAACTTCTTGGGAGAGAAGTACATCCGCCGTGTCCGCATGAGGCAAGGAGTTGCATGTGCAGTGTCTGCCGCTCAAAAAGACGAGTTGGTTCTGGAGGGTAATGATATTGAGCTGGTGTCAAACTCAGCGGCCCTCATCCAGCAGGCAACCACAGTGAAAAATAAGGATATCAGAAAGTTCCTGGACGGTATTTACGTCTCTGAAAAAGGCACTGTAGTGGAGGCAGAGTCATAGAGAACCGAGAGCTGCTCTGATCCAGCAGGCCACCACTGTGAGGAAGAAGGACATCCGGAAGTTCCTGGATGGGATTTATGTCAGCGAGAAGGGCACAGTGGTGGAACAGCAAGAGGACTAAATTAGTCTCTGTAAAATCTGTCAATAAAGACCAACTCCATTTTTCAATCATATATGTGTGCAGGAGTTTCATTCATGTTGATACTGTCTAGTTTCATGAAAGTCTTTAGTTAATGAGGGTTAATGTGCATGTAGTAGAATATGAGCTACGTGTATTGGAAAAACTTGATCGCATTCTTTTGTATTCACTGTTTTTTGGTCCAGGTGTAAAAGTATGTTTTAGTTTCTTGTATATAAAACAATACACAATCTAATGAATTAACATTTTAGAATGGA
>TCONS_00001963
GAAGCCTGTTAGGTTTCCCTGGTACCTCATGATATAGCTtacacacttatatatatatccGTGGATGTATTGATGAGAGAAAACCCGATGGTCTTTGTTAATAGACAGCCCGGTCTGTGTTTATCTGTCAGCGGCACTCAAAGGCCGTAGCAATTTCAAGTCATTCATTAAGCACATTCATATCAAGCCATACTTTTCTTTATATACTTGAAATTTTCGCGTataattaaaattcaattcaagGCTAAAAATTGTGCCATTGAGGCGACTCGAGAAGTTTGTCTTGGCTAACGTAGTAGCACGTAGTATCTGCTCGAATCATTTAAGGGTTTCTAACGTTGCTCTATCGTTTCAGAATGAAGACCATTCTCAGTAACCAGACAGTGGACATCCCTGACAATGTCACGGTGTCCCTCAAGGGCCGCACAGTTACCGTGAAGGGACCCCGTGGTGTTCTCCGCCGGGAGTTCAACCACATTAACCTGGAACTCAGTCTGTTGGGcaaaaaacagaaaaagctGCGTGTGGATAAGTGGTGGGGTAACAGAAAGGAGTTGGCCACCGTCCGCACCATCTGCAGTCATGTCCAGAACATGATCAAGGGTGTCACCCTGGGCTTCAGGTACAAAATGCGATCTGTATATGCCCATTTTCCCATTAATGTGGTCATCCAAGAGTCTGGCTCTCTGGTGGAGATCAGAAACTTCTTGGGAGAGAAGTACATCCGCCGTGTCCGCATGAGGCAAGGAGTTGCATGTGCAGTGTCTGCCGCTCAAAAAGACGAGTTGGTTCTGGAGGGTAATGATATTGAGCTGGTGTCAAACTCAGCGGCCCTCATCCAGCAGGCAACCACAGTGAAAAATAAGGATATCAGAAAGTTCCTGGACGGTATTTACGTCTCTGAAAAAGGCACTGTAGTGGAGGCAGAGTCATAGAGAACCGAGAGCTGCTCTGATCCAGCAGGCCACCACTGTGAGGAAGAAGGACATCCGGAAGTTCCTGGATGGGATTTATGTCAGCGAGAAGGGCACAGTGGTGGAACAGCAAGAGGACTAAATTAGTCTCTGTAAAATCTGTCAATAAAGACCAACTCCATTTTTCAATCAT
>TCONS_00001964
CTTTCCCCCTTAATCGGCGAGAATGAAGACCATTCTCAGTAACCAGACAGTGGACATCCCTGACAATGTCACGGTGTCCCTCAAGGGCCGCACAGTTACCGTGAAGGGACCCCGTGGTGTTCTCCGCCGGGAGTTCAACCACATTAACCTGGAACTCAGTCTGTTGGGcaaaaaacagaaaaagctGCGTGTGGATAAGTGGTGGGGTAACAGAAAGGAGTTGGCCACCGTCCGCACCATCTGCAGTCATGTCCAGAACATGATCAAGGGTGTCACCCTGGGCTTCAGGTACAAAATGCGATCTGTATATGCCCATTTTCCCATTAATGTGGTCATCCAAGAGTCTGGCTCTCTGGTGGAGATCAGAAACTTCTTGGGAGAGAAGTACATCCGCCGTGTCCGCATGAGGCAAGGAGTTGCATGTGCAGTGTCTGCCGCTCAAAAAGACGAGTTGGTTCTGGAGGGTAATGATATTGAGCTGGTGTCAAACTCAGCTGCTCTGATCCAGCAGGCCACCACTGTGAGGAAGAAGGACATCCGGAAGTTCCTGGATGGGATTTATGTCAGCGAGAAGGGCACAGTGGTGGAACAGCAAGAGGACTAAATTAGTCTCTGTAAAATCTGTCAATAAAGACCAACTCCATTTTTCAATCAT
>TCONS_00001965
GCATTTGAATCAAGTTCAATCTGCGTTATTATGAAGCCTGTTAGGTTTCCCTGGTACCTCATGATATAGCTtacacacttatatatatatccGTGGATGTATTGATGAGAGAAAACCCGATGGTCTTTGTTAATAGACAGCCCGAATGAAGACCATTCTCAGTAACCAGACAGTGGACATCCCTGACAATGTCACGGTGTCCCTCAAGGGCCGCACAGTTACCGTGAAGGGACCCCGTGGTGTTCTCCGCCGGGAGTTCAACCACATTAACCTGGAACTCAGTCTGTTGGGcaaaaaacagaaaaagctGCGTGTGGATAAGTGGTGGGGTAACAGAAAGGAGTTGGCCACCGTCCGCACCATCTGCAGTCATGTCCAGAACATGATCAAGGGTGTCACCCTGGGCTTCAGGTACAAAATGCGATCTGTATATGCCCATTTTCCCATTAATGTGGTCATCCAAGAGTCTGGCTCTCTGGTGGAGATCAGAAACTTCTTGGGAGAGAAGTACATCCGCCGTGTCCGCATGAGGCAAGGAGTTGCATGTGCAGTGTCTGCCGCTCAAAAAGACGAGTTGGTTCTGGAGGGTAATGATATTGAGCTGGTGTCAAACTCAGCGGCCCTCATCCAGCAGGCAACCACAGTGAAAAATAAGGATATCAGAAAGTTCCTGGACGGTATTTACGTCTCTGAAAAAGGCACTGTAGTGGAGGCAGAGTCATAGAGAACCGAGAGCTGCTCTGATCCAGCAGGCCACCACTGTGAGGAAGAAGGACATCCGGAAGTTCCTGGATGGGATTTATGTCAGCGAGAAGGGCACAGTGGTGGAACAGCAAGAGGACTAAATTAGTCTCTGTAAAATCTGTCAATAAAGACCAACTCCATTTTTCAAT
>TCONS_00001966
AGAATGAAGACCATTCTCAGTAACCAGACAGTGGACATCCCTGACAATGTCACGGTGTCCCTCAAGGGCCGCACAGTTACCGTGAAGGGACCCCGTGGTGTTCTCCGCCGGGAGTTCAACCACATTAACCTGGAACTCAGTCTGTTGGGcaaaaaacagaaaaagctGCGTGTGGATAAGTGGTGGGGTAACAGAAAGGAGTTGGCCACCGTCCGCACCATCTGCAGTCATGTCCAGAACATGATCAAGGGTGTCACCCTGGTAAGTAGTGTAATGTGTTGGTGCTTTAATCTTTTCCcaatcatattaaataaataagggctgccataaaatgcttttttttgtttcCCAGGGCTTCAGGTACAAAATGCGATCTGTATATGCCCATTTTCCCATTAATGTGGTCATCCAAGAGTCTGGCTCTCTGGTGGAGATCAGAAACTTCTTGGGAGAGAAGTACATCCGCCGTGTCCGCATGAGGCAAGGAGTTGCATGTGCAGTGTCTGCCGCTCAAAAAGACGAGTTGGTTCTGGAGGGTAATGATATTGAGCTGGTGTCAAACTCAGCGGCCCTCATCCAGCAGGCAACCACAGTGAAAAATAAGGATATCAGAAAGTTCCTGGACGGTATTTACGTCTCTGAAAAAGGCACTGTAGTGGAGGCAGAGTCATAGAGAACCGAGAGCTGCTCTGATCCAGCAGGCCACCACTGTG
>TCONS_00001967
GTGGATAAGTGGTGGGGTAACAGAAAGGAGTTGGCCACCGTCCGCACCATCTGCAGTCATGTCCAGAACATGATCAAGGGTGTCACCCTGGGCTTCAGGTACAAAATGCGATCTGTATATGCCCATTTTCCCATTAATGTGGTCATCCAAGAGTCTGGCTCTCTGGTGGAGATCAGAAACTTCTTGGGAGAGAAGTACATCCGCCGTGTCCGCATGAGGCAAGGAGTTGCATGTGCAGTGTCTGCCGCTCAAAAAGACGAGTTGGTTCTGGAGGGTAATGATATTGAGCTGGTGTCAAACTCAGGTGAGCATCTCTTTACGATGTGGTCTGTCAATATATGACAAAATCCTGAAATATTCACTGCTTTATGAATTGAAATGGGATGGTAAGAGTAGAATTTCCCTGCTATTCTAGTTCTAAAGGcctatataaatttttatatattttatacatacatttattatgatttttttgacCAGCTTTGTATCTTTATACGGTCCCAATTCCAAATTCAGTTAGATACTATATTGATTTGTTATACTTAAAtgttacttaaaataataatttagcagACATCTTTGAATATAAATGCTGGTGGCTGAAACCATCTCGCTGTTGCTGTGATGAAATAAAAGTGGTTGTGCCAAACAAAGGGTTTCTCCTAGTTAtccttttgttaatgttttgtttaattccaATATT

Function

symbol description
rfc1 Predicted to enable ATP binding activity; DNA binding activity; and DNA clamp loader activity. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in nucleus. Predicted to be part of DNA replication factor C complex. Human ortholog(s) of this gene implicated in West Nile fever. Orthologous to human RFC1 (replication factor C subunit 1).

GO: NA

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko04977 Vitamin digestion and absorption
ko01523 Antifolate resistance
ko03032 DNA replication proteins
ko03400 DNA repair and recombination proteins
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-030131-8646 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL9 (ribosomal protein L9).
ZDB-GENE-070410-99 Predicted to enable ATP binding activity; DNA binding activity; and DNA clamp loader activity. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in nucleus. Predicted to be part of DNA replication factor C complex. Human ortholog(s) of this gene implicated in West Nile fever. Orthologous to human RFC1 (replication factor C subunit 1).

Ensembl:

ensembl_id ENSDARG00000037350 ENSDARG00000054799

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001958 False 4162 mRNA 0.46 24 23243093 23268569
TCONS_00001959 False 660 mRNA 0.38 5 23265672 23268013
TCONS_00001960 False 314 lncRNA 0.40 3 23267344 23268528
TCONS_00001961 False 2981 mRNA 0.38 6 23267380 23274038
TCONS_00001962 False 1027 mRNA 0.45 8 23269503 23274504
TCONS_00001963 False 1107 mRNA 0.46 7 23269727 23274393
TCONS_00001964 False 655 mRNA 0.50 7 23269727 23274474
TCONS_00001965 False 893 mRNA 0.48 8 23269730 23274425
TCONS_00001966 False 713 lncRNA 0.49 6 23269859 23274040
TCONS_00001967 True 703 lncRNA 0.39 3 23270888 23271791

Neighbor

gene id symbol gene type direction distance location
XLOC_001219 adgrl3.1 coding downstream 85510 22943551 ~ 23157583 (-)
XLOC_001218 SMIM18 coding downstream 381745 22857753 ~ 22861348 (-)
XLOC_001217 qdprb1 coding downstream 391612 22845225 ~ 22851481 (-)
XLOC_001216 ldb2b coding downstream 408269 22805398 ~ 22834824 (-)
XLOC_001215 tapt1b coding downstream 439946 22770255 ~ 22803147 (-)
XLOC_001221 ugdh coding upstream 9028 23283532 ~ 23294753 (-)
XLOC_001222 smim14 coding upstream 23119 23297623 ~ 23308308 (-)
XLOC_001223 pds5a coding upstream 48498 23323002 ~ 23370618 (-)
XLOC_001224 NA coding upstream 142411 23416915 ~ 23436608 (-)
XLOC_001225 NA coding upstream 170981 23445485 ~ 23447300 (-)
XLOC_001211 FP245458.1 non-coding downstream 568480 22663723 ~ 22674613 (-)
XLOC_001205 CR388092.1 non-coding downstream 1051026 22191952 ~ 22192067 (-)
XLOC_001204 NA non-coding downstream 1242043 21999781 ~ 22001050 (-)
XLOC_001199 CR786570.1 non-coding downstream 1562615 21680364 ~ 21680478 (-)
XLOC_001189 BX323083.5 non-coding downstream 2227163 21010689 ~ 21015930 (-)
XLOC_001229 NA non-coding upstream 477449 23751953 ~ 23783769 (-)
XLOC_001230 NA non-coding upstream 634213 23908717 ~ 23911006 (-)
XLOC_001234 NA non-coding upstream 1327828 24602332 ~ 24606762 (-)

Expression


Co-expression Network