RNA id: TCONS_00001963


Basic Information

Item Value
RNA id TCONS_00001963
length 1107
RNA type mRNA
GC content 0.46
exon number 7
gene id XLOC_001220
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23243093 ~ 23274504 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGCCTGTTAGGTTTCCCTGGTACCTCATGATATAGCTtacacacttatatatatatccGTGGATGTATTGATGAGAGAAAACCCGATGGTCTTTGTTAATAGACAGCCCGGTCTGTGTTTATCTGTCAGCGGCACTCAAAGGCCGTAGCAATTTCAAGTCATTCATTAAGCACATTCATATCAAGCCATACTTTTCTTTATATACTTGAAATTTTCGCGTataattaaaattcaattcaagGCTAAAAATTGTGCCATTGAGGCGACTCGAGAAGTTTGTCTTGGCTAACGTAGTAGCACGTAGTATCTGCTCGAATCATTTAAGGGTTTCTAACGTTGCTCTATCGTTTCAGAATGAAGACCATTCTCAGTAACCAGACAGTGGACATCCCTGACAATGTCACGGTGTCCCTCAAGGGCCGCACAGTTACCGTGAAGGGACCCCGTGGTGTTCTCCGCCGGGAGTTCAACCACATTAACCTGGAACTCAGTCTGTTGGGcaaaaaacagaaaaagctGCGTGTGGATAAGTGGTGGGGTAACAGAAAGGAGTTGGCCACCGTCCGCACCATCTGCAGTCATGTCCAGAACATGATCAAGGGTGTCACCCTGGGCTTCAGGTACAAAATGCGATCTGTATATGCCCATTTTCCCATTAATGTGGTCATCCAAGAGTCTGGCTCTCTGGTGGAGATCAGAAACTTCTTGGGAGAGAAGTACATCCGCCGTGTCCGCATGAGGCAAGGAGTTGCATGTGCAGTGTCTGCCGCTCAAAAAGACGAGTTGGTTCTGGAGGGTAATGATATTGAGCTGGTGTCAAACTCAGCGGCCCTCATCCAGCAGGCAACCACAGTGAAAAATAAGGATATCAGAAAGTTCCTGGACGGTATTTACGTCTCTGAAAAAGGCACTGTAGTGGAGGCAGAGTCATAGAGAACCGAGAGCTGCTCTGATCCAGCAGGCCACCACTGTGAGGAAGAAGGACATCCGGAAGTTCCTGGATGGGATTTATGTCAGCGAGAAGGGCACAGTGGTGGAACAGCAAGAGGACTAAATTAGTCTCTGTAAAATCTGTCAATAAAGACCAACTCCATTTTTCAATCAT

Function

GO: NA

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko04977 Vitamin digestion and absorption
ko01523 Antifolate resistance
ko03032 DNA replication proteins
ko03400 DNA repair and recombination proteins
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-030131-8646 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL9 (ribosomal protein L9).

Ensembl:

ensembl_id ENSDART00000147800

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001960 lncRNA downstream 1199 23267344 ~ 23268528 (-) False XLOC_001220
TCONS_00001950 lncRNA downstream 418308 22845289 ~ 22851419 (-) True XLOC_001217
TCONS_00001938 lncRNA downstream 617701 22651579 ~ 22652026 (-) True XLOC_001210
TCONS_00003411 lncRNA downstream 1268677 21999781 ~ 22001050 (-) True XLOC_001204
TCONS_00001926 lncRNA downstream 1387959 21880255 ~ 21881768 (-) True XLOC_001201
TCONS_00001972 lncRNA upstream 26887 23301280 ~ 23308262 (-) True XLOC_001222
TCONS_00003412 lncRNA upstream 142522 23416915 ~ 23436608 (-) True XLOC_001224
TCONS_00003413 lncRNA upstream 171092 23445485 ~ 23447300 (-) True XLOC_001225
TCONS_00003414 lncRNA upstream 477560 23751953 ~ 23783769 (-) True XLOC_001229
TCONS_00003415 lncRNA upstream 634324 23908717 ~ 23911006 (-) True XLOC_001230
TCONS_00001958 mRNA downstream 1158 23243093 ~ 23268569 (-) False XLOC_001220
TCONS_00001959 mRNA downstream 1714 23265672 ~ 23268013 (-) False XLOC_001220
TCONS_00001957 mRNA downstream 158894 22945267 ~ 23110833 (-) False XLOC_001219
TCONS_00001956 mRNA downstream 158894 22945267 ~ 23110833 (-) False XLOC_001219
TCONS_00001955 mRNA downstream 158894 22945267 ~ 23110833 (-) True XLOC_001219
TCONS_00001968 mRNA upstream 9139 23283532 ~ 23294753 (-) False XLOC_001221
TCONS_00001969 mRNA upstream 9745 23284138 ~ 23293261 (-) True XLOC_001221
TCONS_00001970 mRNA upstream 23230 23297623 ~ 23308308 (-) False XLOC_001222
TCONS_00001971 mRNA upstream 24543 23298936 ~ 23308225 (-) False XLOC_001222
TCONS_00001974 mRNA upstream 48777 23323170 ~ 23370529 (-) False XLOC_001223
TCONS_00001939 other downstream 595114 22663723 ~ 22674613 (-) True XLOC_001211
TCONS_00001929 other downstream 1077660 22191952 ~ 22192067 (-) True XLOC_001205
TCONS_00001923 other downstream 1589249 21680364 ~ 21680478 (-) True XLOC_001199
TCONS_00001916 other downstream 1742356 21526672 ~ 21527371 (-) False XLOC_001195
TCONS_00001899 other downstream 2256513 21011062 ~ 21013214 (-) True XLOC_001189
TCONS_00001973 other upstream 48609 23323002 ~ 23330066 (-) False XLOC_001223
TCONS_00001976 other upstream 65571 23339964 ~ 23340503 (-) False XLOC_001223
TCONS_00001977 other upstream 66578 23340971 ~ 23341690 (-) False XLOC_001223
TCONS_00001997 other upstream 1550754 24825147 ~ 24825263 (-) True XLOC_001235
TCONS_00002010 other upstream 2281332 25555725 ~ 25557930 (-) False XLOC_001242

Expression Profile

//