RNA id: TCONS_00003412


Basic Information

Item Value
RNA id TCONS_00003412
length 668
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id XLOC_001224
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23416915 ~ 23436608 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aagaataCAGGGTCGGTGATATAAGGTTGCCTTGGCCAAGACAAGAATACTCATGAGGAAGACCATGATGAAAAACACCCACATGAAGAACCTGTCCATCACCTTGGCAACCTTCTTCCACTCGGCCCCTTTGGCCTGGTGTCCCCTCTGCTCTCTGAAACAGTTAGCTATGTACTCAATGTTTCGCACCAATTTCTGATGTTTTCCACAGACACACCCTGTGCCAGTAGTTGTCTTATTGTAGCTATCTGCTCCAAAGGTTTTGCTGTAGCCATTATCGTGAAGGTAGCCGACTCCATTGAGATACCCATTGCCCTGATCATATGTGTATCCGTTAATTTTTTCTGGAATGGAGATTTCACTGTCTTTGAGTTTTTCCTGACTTGTTAGTGGGAGCTTTTCGCTTCCATCTCGACCGATGAAGTGTGTATATTTTGGATGATGGGAACTCTGTCGAACAGGGGAATTTGATGACGATCGGGTTCTTCTTTGCTGCTCATTCCTATGTTGCCGATAGCTGCTGTTTTTGTGATGGTACCCATTCCCATGTCGGTGGTCTCTGTGACTGTACCCATTAAACTGACTGCGGATTCTCTCATCAAGGTGACAGTCTTCATAAAACCCTTTGTCAAAATACCCATCTCTCTCCAGGCTAGCCAGTGGATCTT

Function

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001972 lncRNA downstream 108653 23301280 ~ 23308262 (-) True XLOC_001222
TCONS_00001966 lncRNA downstream 142875 23269859 ~ 23274040 (-) False XLOC_001220
TCONS_00001967 lncRNA downstream 145124 23270888 ~ 23271791 (-) True XLOC_001220
TCONS_00001960 lncRNA downstream 148387 23267344 ~ 23268528 (-) False XLOC_001220
TCONS_00001950 lncRNA downstream 565496 22845289 ~ 22851419 (-) True XLOC_001217
TCONS_00003413 lncRNA upstream 8877 23445485 ~ 23447300 (-) True XLOC_001225
TCONS_00003414 lncRNA upstream 315345 23751953 ~ 23783769 (-) True XLOC_001229
TCONS_00003415 lncRNA upstream 472109 23908717 ~ 23911006 (-) True XLOC_001230
TCONS_00001996 lncRNA upstream 1103810 24540418 ~ 24552267 (-) True XLOC_001233
TCONS_00002949 lncRNA upstream 1165724 24602332 ~ 24603352 (-) False XLOC_001234
TCONS_00001975 mRNA downstream 46297 23323670 ~ 23370618 (-) False XLOC_001223
TCONS_00001974 mRNA downstream 46386 23323170 ~ 23370529 (-) False XLOC_001223
TCONS_00001978 mRNA downstream 46520 23343763 ~ 23370395 (-) True XLOC_001223
TCONS_00001970 mRNA downstream 108607 23297623 ~ 23308308 (-) False XLOC_001222
TCONS_00001971 mRNA downstream 108690 23298936 ~ 23308225 (-) False XLOC_001222
TCONS_00001979 mRNA upstream 69917 23506525 ~ 23557877 (-) True XLOC_001226
TCONS_00001980 mRNA upstream 136616 23573224 ~ 23595921 (-) False XLOC_001227
TCONS_00001981 mRNA upstream 138224 23574832 ~ 23595779 (-) False XLOC_001227
TCONS_00001982 mRNA upstream 148422 23585030 ~ 23596391 (-) False XLOC_001227
TCONS_00001983 mRNA upstream 149953 23586561 ~ 23588996 (-) True XLOC_001227
TCONS_00001977 other downstream 75225 23340971 ~ 23341690 (-) False XLOC_001223
TCONS_00001976 other downstream 76412 23339964 ~ 23340503 (-) False XLOC_001223
TCONS_00001973 other downstream 86849 23323002 ~ 23330066 (-) False XLOC_001223
TCONS_00001939 other downstream 742302 22663723 ~ 22674613 (-) True XLOC_001211
TCONS_00001929 other downstream 1224848 22191952 ~ 22192067 (-) True XLOC_001205
TCONS_00001997 other upstream 1388539 24825147 ~ 24825263 (-) True XLOC_001235
TCONS_00002010 other upstream 2119117 25555725 ~ 25557930 (-) False XLOC_001242
TCONS_00002015 other upstream 2239089 25675697 ~ 25676340 (-) True XLOC_001244
TCONS_00002016 other upstream 2273205 25709813 ~ 25711803 (-) True XLOC_001245
TCONS_00002024 other upstream 2481666 25918274 ~ 25936641 (-) True XLOC_001249

Expression Profile

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