RNA id: TCONS_00001980


Basic Information

Item Value
RNA id TCONS_00001980
length 6841
RNA type mRNA
GC content 0.41
exon number 8
gene id XLOC_001227
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23573224 ~ 23596391 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGTACAGTGACGTCACGGTTAGAGCCGGGGGGAAGGTGGACGGACAGAATGGCGGCGACCCAGTGCCGGAGCTCCAAATGCACGGCCGAAAGAAAAGGATTCCGGCGGGAACTCGACTCATGGCGACACAAGCTCATTCAGTGTGTCGGATTTGAAAGTATACTGGAGGGAATATATGGACCAAGACTGCTGCAAGACCTCAATATATTTGATGAGTGTGAACCAGAGGATTTGGATGATTGGTCCATTGATGCAAACTGCTCCTTTTGCAATCTGCAGTTAGAGAAACTGAATGAGCATCCTGCTGTGCCCGGGTCGCCACCCCCTGCTGAAACCCCCCCACCTCAGGGCCTGTCCACCTCTGATAAAGTCCAGTGCCAAGCAGACCGATTCCTCTATGCTATATTTCGCAAAAAGGAATTTCCTCAGAGCTGCGATTCAAGTATACCACTGGTTGCACAGGAGTTGATGCGCAGAATGATTCGGCGATTTGCCTTAGAGTATGCATGTAAAAGTCAGACTCATGGAGACCTGAATGGCCTGAGTGACAATTCTGAACGTCTCCTTAGCCAACCAGATCCTGATGGGCCTCTGGACCTCACTGTCAGCAGAGCTTCTCCAGCCCTTCAAGttgaTGGAGTACTTGACCTCTCTAAGAAAAACACACCTTCTGAGAATGAAACGACACTACAGATAAGTTCAGGTTCCTTAGGATCAAGTGTGGAAGACAAGTCCAGTCTGGAGACTGAAGATGGTTCTATAGTTCCTGAGGTTGGGAAAATCACTGTGTTGGAGAAGGTCCTGTCTTCACTTTGTTCCCGTCATAGATTACTACTCACTCATATTTTAAAGGATGTGCAGGAAGATTACAACATCTCATTATCTCTAAGGGATGCTCATGGAAAACAGGCTGGATCCCTTTGTTGCCATCTTCATAAAAAACTGCTTAATGAAGCCCCGACACTTGCATTAAGTGACTGCTCAGTAACTGCTGGCATTTGTTGCAGAACAGCTTGTGAGCATCCAACATGTGCATTTTCTCCTCCATGTGTCTCTCTGAGGAATGTTCATGGCCATTCCTGCCAAAATACAGCAATTGCATGTGTTGGTCAAGCCATCTGTTGTAACCTCAGTGATTGTTGTACTAGTTCAAAACAACTCTCATGCCAGCATCAACACAATAGTGATCATACCTACATTTCTCATGCAAGGGGTTCTCTAATCATTCCTCCAGGTGATAGTAACTCTCagaacagacataaaggaagccgTAGCCCCTCTCCACCACCACTCTCGCCAAAACCTGTTGACCTGGATTATAAAATAGCAGTCAAGCCCAGTATCTTTCCCATTCAGGAATTCAAGGCCCCGAACATAGCACCTCCCTCTCTCCTACCTCACAGAAGCGAGAATAAAGAAACAACTTTATGCTCCAGCACTCCTCTTCATGTGGGATCTTCTGATGGATGTTGTGAAAAGGTTGTAACATTGCAAACACAAGCAGAGAAAGATGACCACCAATGTGGATCTTTTATAGGAGATCTTATGGACAGAGTCACTGAACAGCTCAAGAGTATCCAACCCTCTGAGAAGGAACAAAACATTCCTGCGCATGCCAGTCAAATCTCCAGGATAAGAGACGACACACATTTGACCGAGATTATAACAACTGTGTTGCATAACAGTAGTGATAAAGATTATAACCTTAATGATCTTTTACAACAGCATGTAGCCACAGAACAGCGATCACCTCAAACACGTTCCCGTAAGAGATTTGAAACTTTAGTTGCCATGAGCAAATCATCTGACCTTCCATCATCACGAAGACAGAGCTTACAAATCAAAAGAGACCTGGCTAGACTTAGTCCGGCATTTTCCAAGAGAAATACAAGATTGGATTGGAATAGAGGCACAAAAAGGGTTAAACCTTTGGAGCTAACATACTCGCTTACTGAACAACCTCAGTGCAGAAAGTTGAACAGGACAGTGTACACAGAACCTGTAAATGATAACTTGAACACTGGACATATGACCACacatgcagaaaaagaaaaaaaagaatataaccAAGAAACTCACATCCAGCATGTTGTTAAAGAACAACTGCCTCCTAATGAAAGAGCACAGCCACAAAACACAGATAGTGACCAGAAGATGAAGGCAAAAATCCATAAAGAAAAATGTCTGGCTGTTCAAGTTGAAAGAACCAGAAGAAATATTGTTCCACCTCAGCGTTTCTCTTCTTATGTTACTGAGCCACGAAAGATGTATTTTGCAGCCTGTTTTTCAGAAAGTATATTCACAAAGCATTCCTCTAGAGATGGCACCTTAACAGCGCTAGGATCCACAGAAGAAATTTTCTTGCCTAGTGATAAATGTGGCAAGATGGAGCATGAACAAGAAGACTGTGGAGTACCACAGAACAATAGTTTACCGAAACATGACAATTTATCAAAAAAAGAGCCCCTTAGTGAGTGCAAGAATAATGAAAGAAGTCCTCATAAGGAGAGAAAAAGGAAATCATTCCAAAATTCTACCTTGCCATCAAAGAGATCTAAATGTAGCAGAGCCAACAGTCTGAACACTGAACCACACAGTCCTACTATATCTAACTTTACTACCACTGAGAGCACATCACAGGCTGAAGCAAGCCCGTCTAGACTGAAATATGACAGTCCAATAAAGCTCATGTTTGTTTCCTCTGTGAAAGGTGAAGATGGAATAAAATACACACTCAAAGCAGCTGCCTCTGGCTCAGAATCACATTGTGAGATGTTTGATCCATGTGTGGAATCATCATGGGCAGGCAGTGCCATAGACGACAATAACCAGGATTCAGTCTTTGAATCTAATCCAAGCAAAACTGTTGAGCATGTTGAGAACAAGTGCACTTCGCCAAATATGGTTTCAGCTGGTTCTCCATTGTCCAGTTTTTCAAGTGAAAGCCAAGAACCACTACCATTTATACATCAAACAACTCCAATAAAAAGGCGGCCTGGGCGTCCCAAAAAAATTGGACCACAAATTGTGAAGTCTGTGAAACGTCCCATTGGGAGACCTCCAAAACCTAAAACAACAGACTTAAGTTCAAGTACACCCAGTTCAAATGCAGTCAATCAGGGAACACATGAAATATCTTCTAAAGAGGATGATAACAAAAAATTGAAAATCACTATATTGTATGGAAGATCAAGAAGAGTGAGGAGAGTAGTTTCTGAAGATCTGGGTAGTTTCTTGACACAGCAACCTGCTTATGAAGAATACAATGGTTGCATGTACAGTAAAACAAGTACTAATGATCAAACAACCAAAGATCAGTTTAAAGATCTACATCTTGTTATGCCTATAGAGGACAGGAAATGTATCCACTCTAGCAGTAACATCAAATGTCAACGACAGAGCGACATTATATTGTCAAGGAAACCAGGGCGACCTCCAAAAGTCCAAAAGATTTCTGGCATTTCTGTCACAGTCACATCAGGGTCACCAAGACAaagaaagatacatttaaaaagagacacaaaagATTCACATCTGCTCAGAAGGACTCTTGAACTTCAACCTTCCAAAGAGCAGAAGACGATCTGCATTCCTACTGACATTAACAAAGATAGAGTGGATGCGCAGAAAGAATATAATCCGAATACTAGAAGGCAGCTCATACCGGTGAGACATTCTATTAGAGAACGGAAACCCTCGATTCATTTGCTTCACTCTGTTGCTACTGCCAGATCCTGCGCATTGGTTCGCAGGTCGAGAAAACTACTGCTGAATAAGGCTAGCTGCGAGGCAAGCCAGCATGTAAAGAACATAAAAGAGGAACCCCCAAACAATGCACTTTCCATTAAGACCAAGAATGTCAGTAGTGTACAAGACATTGTTCGTTTTTCTGCTATTTCAGTCAACTCCATTTTCTCACCACATGAGGGTTTCAGGTGGTGGCCCACATCAGCATCACCTGAGACCTTGAATGAAGAGTTAGCTAGGAGGATCAAGCTGATGTCCAATACTTGGGTATCAGATGTCCTTGAGGCAAACCAGTCAGGAGAGATCAAACCGGATCTTAAACCAAAAACTTGTAAGGAGCTTCTTGATGCTCCCAAGAAGTCTACTTCTGCCATTAAAATGCTTTTTGAGAAAAATTATAATATGGAGAAGCTCTGCTCTTGGTTTATGCAGTCCACGGAAACTCAGTCCCTAGCAATTGTAAAGAAGGCCATTGCAAGGAATCCCAAGGATGTCTTTCATTACAGCCTCAGCAGACCCAATTGCAAAGTTAATGCTTGCCCAAGTCCACAAGCAGAGCGACTCAGgaaacatgtaaaaaaatttgCTAAAATCGTTCCAAAGAGTCCATCAATGCACAAAAAAGCACAAGAAATGTTGTCCAAGTCCGCAAGGCCAATAGCAAAGAGAAAGCTCTTTgacacatcatcatcatttaaacagAATATTTCAATGTCTAGAGGCATATGGGTTGACTACCGAAAAGCTCTGATTAGAGCAAGACAAAAATTTAAAACCAGGCATAAGATAGCATTACGAGATGAAGTTTGTGACCAAATGAGGACTTCAGGTGCTAAGACTCTAAAGTTACCGAAAGAAATGCCTAAGTTGGTAGACAAGCCATCCAAACCAGTCATGAAAGTTCAAAATGCATTAAAGCTTTTAGTCAAAACTCCTCCAAAAATGATTGGGCTTTccaacatttcaaagcaaaatagAATCAGCTCCGAAGCTTGGAGTCCAGAGTCGCTAAAAGAGTGCAGAGTGTTTCTGAAAAAGATCAACTCTCCAAACACCAAGTCTACGACAGAGGAATGTAATGTTTGCACCGTAAAGCTTTATGATGTCTCAGAGCATGAGGAGAGTGAGGATATTACGGTGAAAGGGACACACAACTCTCCAGTACAGCTACCCTTGTCCTCGAAAAGCCCGAGAAAAGTAGGAAGAAAAAAAGGGAAACTAAAAAATCCCTCTCCTTCAACAAAAATGCTCAGACAATCAAGAAGCTGCAGGGGTGTTCTGGGAGCAAGGTGGTGTGACTTTGTGCTCGGATCATTAAAGTAACTTGGGACCAGTTTCGGGCAAGACATTTTCTTGAACTCTTAACACAAGGTGCCTTTCAACAGTGGTCTGGCTGAGTATCAAAAGCATTATGACACACAACCTCAGCAAGCGTCGTGTAGCAAAAACAACGTAAAAATTCATTTGACACTTGTTgcactatttaaatattttatttgtaaaacgtttcatttttttacttggcTTTATTTTTGGTGCAGACCAGAAGATCTGTTTGCATGAAGGAGTATGAAAGGTTACATGAGCAGTATGTTGTCTGGGTGTCAGCCTGTGATTTTAAAACTTTCTGAAGAcaactttttttcacatttacatttttaaaggatACAAATGATCTTATTTTTAGATTTGCCAATGTTTGATAGGAGTCTTATGTGCTATAAATGTTGCCACTAAGACAAAAACTGCCCATTCAAATAGAACTTTTAAATTTGAAAGTGAGTGTAGTGTTTTTACTTTAAGTTCAGtcactttattattatcattactttaCAGAAATATTTGACTGGAATTTAGATTGTTTGACTGTTTTGTGGGAAATCATTTAAGCATTAATCTACATCCTTGTTCTTATTGCACTACCAAACCCCTCCTGCttctcatttcattttatttctaactACAACAAAAGTTGTAACGTACAGTGTATTTTAGTGCAATGTTTTACTTTTAGAAAGATGTAAAAGTCTATTTTACTTTCTCTTAAATTAAAAGCTTTTAAGATTATCCTGAAGCAAATGTGCTCCACATATCGTTTCTTGGGGAAGAAAAGCATACCTTGTGAAAATCTTAAATTGTGATCTTGCAGTATGACACCTACCTCCTGAACTGTACTGGTAAGTCATGGTAGTTCAGCCTGAAATGATTATGTATTGTTGTGACCTTGTCTTTGATTTAGGCcatgtttagttatttatttaacatttgttgTTAGTCCTACTGCTACTTTAGCTTCTGTTGGTCACCAAAATGAATTTAGGTTCCTTTTAACAAGACTGGCTTGCATCTGTGCATTTAAAATGTAGTCAGATTGATAATCTAAGCTTTGAGAAACTGGTCTTTGACATTATCTAATATGTTCTACTGGATTTAAACCTTTGTGTCTGGGGAATGTCAGCTAGTGTTTGTTCTAAAACGGcagaaattaaacattttagcatttttagACATTCACTCACTCTAACACTGTGGAGTGTCTTACACCTGGAGCAGCTGCGGGTTTAGTGGGGACTTAACTTCAATCGTGGGAGGAAAAGAGTGCCGGTTATTCATTACCCCCTCACCTAAAACCTTTGCCAGGAACTGAACCACTGACCTTTAGGAACACAAGTCCAACTCTCTAACTGGTAGGCCAGGCTGCTAAATGCTTTTCAGTTACCCTTTACATAACCAGTGGCAGTGCCAACATGAATGTCTGCACAAACCTCAGCAATCCCAACTAGTGCTTTTAGGGTCACAACCATTCGAAGTACTACTGTCAAACAGAcaaggctaaaaaaaaaaaaaaaaaaaaaaggaaaggtaCATTTTGCCTGTACACCTATGCCAACCGACAGCTGGAGTTGAAGCTTGTTATAAGACCTGTTAGGTCTTCTGTATATTGTTTTTTTGGCCACTGTATATTTGTTACCTGGTGCTACAAGTTGTACATAATCGTATAACTTATGTACATGTattgtgttttctgtgttttttataCTTGCCTTCAAAGATGCTGTCTCaatcattaaaacaataaaagctCTTGTgaa

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6300 Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human LCORL (ligand dependent nuclear receptor corepressor like).

Ensembl:

ensembl_id ENSDART00000138852

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003413 lncRNA downstream 125924 23445485 ~ 23447300 (-) True XLOC_001225
TCONS_00003412 lncRNA downstream 136616 23416915 ~ 23436608 (-) True XLOC_001224
TCONS_00001972 lncRNA downstream 264962 23301280 ~ 23308262 (-) True XLOC_001222
TCONS_00001966 lncRNA downstream 299184 23269859 ~ 23274040 (-) False XLOC_001220
TCONS_00003414 lncRNA upstream 156032 23751953 ~ 23783769 (-) True XLOC_001229
TCONS_00003415 lncRNA upstream 312796 23908717 ~ 23911006 (-) True XLOC_001230
TCONS_00001996 lncRNA upstream 944497 24540418 ~ 24552267 (-) True XLOC_001233
TCONS_00002949 lncRNA upstream 1006411 24602332 ~ 24603352 (-) False XLOC_001234
TCONS_00002948 lncRNA upstream 1006411 24602332 ~ 24603352 (-) False XLOC_001234
TCONS_00001979 mRNA downstream 15347 23506525 ~ 23557877 (-) True XLOC_001226
TCONS_00001975 mRNA downstream 202606 23323670 ~ 23370618 (-) False XLOC_001223
TCONS_00001974 mRNA downstream 202695 23323170 ~ 23370529 (-) False XLOC_001223
TCONS_00001978 mRNA downstream 202829 23343763 ~ 23370395 (-) True XLOC_001223
TCONS_00001970 mRNA downstream 264916 23297623 ~ 23308308 (-) False XLOC_001222
TCONS_00001984 mRNA upstream 810 23596731 ~ 23598674 (-) False XLOC_001228
TCONS_00001985 mRNA upstream 1292 23597213 ~ 23598657 (-) False XLOC_001228
TCONS_00001986 mRNA upstream 1388 23597309 ~ 23598662 (-) True XLOC_001228
TCONS_00001987 mRNA upstream 323497 23919418 ~ 24349789 (-) False XLOC_001231
TCONS_00001988 mRNA upstream 379376 23975297 ~ 24255149 (-) False XLOC_001231
TCONS_00001977 other downstream 231534 23340971 ~ 23341690 (-) False XLOC_001223
TCONS_00001976 other downstream 232721 23339964 ~ 23340503 (-) False XLOC_001223
TCONS_00001973 other downstream 243158 23323002 ~ 23330066 (-) False XLOC_001223
TCONS_00001939 other downstream 898611 22663723 ~ 22674613 (-) True XLOC_001211
TCONS_00001929 other downstream 1381157 22191952 ~ 22192067 (-) True XLOC_001205
TCONS_00001997 other upstream 1229226 24825147 ~ 24825263 (-) True XLOC_001235
TCONS_00002010 other upstream 1959804 25555725 ~ 25557930 (-) False XLOC_001242
TCONS_00002015 other upstream 2079776 25675697 ~ 25676340 (-) True XLOC_001244
TCONS_00002016 other upstream 2113892 25709813 ~ 25711803 (-) True XLOC_001245
TCONS_00002024 other upstream 2322353 25918274 ~ 25936641 (-) True XLOC_001249

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_09155687_09175481.mRNA True 5016 mRNA 0.43 6 CI01000300 9155687 ~ 9175481 (-)