RNA id: TCONS_00001985


Basic Information

Item Value
RNA id TCONS_00001985
length 408
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_001228
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 23596731 ~ 23598674 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggagtgaCAAAATTACcccttcaacagaagaaaagagcCAAGATGAAGGGAGCTAATCACAGAGCTGGAGGAAACACAGATTTTGGATTGTCCTCCACTCACTCTACCACTTTGTTTTTCCTTGCCAGACTTCATTCAAGAAAGAAGCCTGCTACAAGAGAGACAGTGGAAGGGAGCCTCAAAGACATTTTTATTAGGATCTGCTAATCATGAGGGGGCAGACAAAAGAACctgcattttccttcagcttaatatcaggagtcgccacagcgtaaGGAACTGGATAttactttggcatatgttttacacagccttccagctgcaacccagcactgtgaaacacccatacactcttgtattcacaGACACTTCTACACTATgttcaaattcacctatagcacaagtgtt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000144348

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003413 lncRNA downstream 149913 23445485 ~ 23447300 (-) True XLOC_001225
TCONS_00003412 lncRNA downstream 160605 23416915 ~ 23436608 (-) True XLOC_001224
TCONS_00001972 lncRNA downstream 288951 23301280 ~ 23308262 (-) True XLOC_001222
TCONS_00001966 lncRNA downstream 323173 23269859 ~ 23274040 (-) False XLOC_001220
TCONS_00003414 lncRNA upstream 153296 23751953 ~ 23783769 (-) True XLOC_001229
TCONS_00003415 lncRNA upstream 310060 23908717 ~ 23911006 (-) True XLOC_001230
TCONS_00001996 lncRNA upstream 941761 24540418 ~ 24552267 (-) True XLOC_001233
TCONS_00002949 lncRNA upstream 1003675 24602332 ~ 24603352 (-) False XLOC_001234
TCONS_00002948 lncRNA upstream 1003675 24602332 ~ 24603352 (-) False XLOC_001234
TCONS_00001982 mRNA downstream 822 23585030 ~ 23596391 (-) False XLOC_001227
TCONS_00001980 mRNA downstream 1292 23573224 ~ 23595921 (-) False XLOC_001227
TCONS_00001981 mRNA downstream 1434 23574832 ~ 23595779 (-) False XLOC_001227
TCONS_00001983 mRNA downstream 8217 23586561 ~ 23588996 (-) True XLOC_001227
TCONS_00001979 mRNA downstream 39336 23506525 ~ 23557877 (-) True XLOC_001226
TCONS_00001987 mRNA upstream 320761 23919418 ~ 24349789 (-) False XLOC_001231
TCONS_00001988 mRNA upstream 376640 23975297 ~ 24255149 (-) False XLOC_001231
TCONS_00001989 mRNA upstream 664988 24263645 ~ 24349759 (-) True XLOC_001231
TCONS_00001990 mRNA upstream 778041 24376698 ~ 24462544 (-) False XLOC_001232
TCONS_00001991 mRNA upstream 795516 24394173 ~ 24462691 (-) False XLOC_001232
TCONS_00001977 other downstream 255523 23340971 ~ 23341690 (-) False XLOC_001223
TCONS_00001976 other downstream 256710 23339964 ~ 23340503 (-) False XLOC_001223
TCONS_00001973 other downstream 267147 23323002 ~ 23330066 (-) False XLOC_001223
TCONS_00001939 other downstream 922600 22663723 ~ 22674613 (-) True XLOC_001211
TCONS_00001929 other downstream 1405146 22191952 ~ 22192067 (-) True XLOC_001205
TCONS_00001997 other upstream 1226490 24825147 ~ 24825263 (-) True XLOC_001235
TCONS_00002010 other upstream 1957068 25555725 ~ 25557930 (-) False XLOC_001242
TCONS_00002015 other upstream 2077040 25675697 ~ 25676340 (-) True XLOC_001244
TCONS_00002016 other upstream 2111156 25709813 ~ 25711803 (-) True XLOC_001245
TCONS_00002024 other upstream 2319617 25918274 ~ 25936641 (-) True XLOC_001249

Expression Profile

//