RNA id: TCONS_00001955


Basic Information

Item Value
RNA id TCONS_00001955
length 4629
RNA type mRNA
GC content 0.52
exon number 22
gene id XLOC_001219
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 22943551 ~ 23157583 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTGCGCGTCAGAAAGAAGCGCAATGGCTTTAACGTGTCCGAGACGCAGCTTCAGCGAGTCAGTGCAGAGGTCAACAGGGTCATCGGCGGTCATGTGGTCCACACGCCTACTTTTCTTCTTCACCCTCTTCACACCCGTCACGCTCGTTTTGAGTCGGGCTCCAGTGCCGATGGCTGTGGTGCGTCGAGAGCTGTCGTGTGAGGGTTATCCTATCGAACTGCGCTGCCCGGGCACTGATGTCATTATGATCGAGAGCGCCAATTATGGGCGCACAGATGACAAGATCTGTGACTCGGACCCCGCTCAAATGGAGAACACTCGCTGCTATCTGCCTGATGCCTACAAGATTATGGGCTTCAGGTGTAACAACCGGACTCAGTGTGCAGTCGTTGCTGGCCCTGATGTTTTTCCCGATCCGTGTCCTGGAACGTACAAATACCTGGAGGTTCAGTATGAGTGTGTGCCATACAAAGTGGAACAGAAAGtctttctctgccCAGGTGTATTGAGAGGCGTGTACCAGAGTGAACATCTCTTCGAATCAGACCACCAGGCTGGATCATGGTGTAAGGACCCCTTACAGTCATCCAATAAGATCTACTACATGCCCTGGACACCGTATCGCACAGACACACTGACTGAGTATTCATCTAAGGAGGACTTTATTGCAGGTCGCCCTACCACCACATACAAACTGCCCCATCGGGTGGACGGCACTGGGTTTGTGGTGTATGATGGCGCGCTTTTCTTCAACAAGGAACGTACACGCAACATTGTTAAATTCGACTTGCGAACTCGTATCAAGAGTGGTGAGGCAATTATCGCTAACGCTAATTACCATGACACCTCGCCATATCGCTGGGGTGGAAAGTCTGACATTGATCTCGCAGTGGATGAAAATGGACTATGGGTGATTTATGCCACCGAACAGAACAATGGCCGAATCGTGGTCAGTCAGCTCAACCCCTACACACTCAGAGTGGAGGGCTCATGGGATACATCATACGATAAGAGATCAGCCTCCAATGCCTTCATGATCTGCGGAATCCTTTATGTCGTGAAGAGTGTTTACGAAGATGACGATAATGAAGCTCTAGGGAATAAAATTGACTACATGTACAACACAGAGAAGAGCCGTGAAACGCATCTTAGCATCCCATTTCCAAATTCCTACCAATACATCGCAGCCGTGGACTACAATCCCAGAGACAACTTGCTGTATGTGTGGAACAACTACCATGTCGTCATATATTCTCTCGACTTTGGAAACAATGACAACAGACTGGGCTTTGATCCGCCTTCTTCAGTCTTGCTACCTGATCCTCTTCCTCCAGTACGCAGCTCCACGACTCCTCCACGCCCATATACAGGCACGCTCCGCCCCTCTCTCACCACTACCACGACGACCACCATGGTTCCTCCTCGCCGCCATAACAACGTCCTCCCAGAAGCCCTGACTCGAGCGCCTCCCTCCCCGCAGACTCCCGTCACTGTTGACTATTGTGCCCCACGTCTCACTGCTGAAATCTCCTGGCCACGGACACACCAGGGACAAGTTGCTAAGCAACCGTGCCCACCTGGCACCATAGgtGTAGCCACGTTTAATTGTTTGCTTGGCTACTGGGACCCGAAGGGACCAGATCTGAGCAACTGCACCTCACCGTGGACCAATCATATCACTCAAAGAATGAGATCGGGCGAAACTGCTGCTATAGTAGCCCGGGAATTGGCTGAACAGACAAAGGGAGAGTTGAGACCCGGAGATGTCCCATCAACAGTCAAAGCCATGGCACAGCTGGTGGAACTACTGGACGTGCAGCTGCGAAACCTCACCCCTGGGGGAAAAGACACCGCCGCACGCAGTTTAAACAAGCTCCAGAAGAGAGAACGGTCGTGCCGCTTCTTCATACAGGCCATGGTGGAGACGGTGAATAACCTTCTGCAGGTGCGATCTCAGGCGGCGTGGAGAGAGCTTTCTGTAGCCGAGCAGCTGCGATGCGCAACCATGCTCCTGGACACGGTGGAGACGGGAGCCTTCATGCTCGCAGACAACCTGTTAAAAACAGACACCATACAGGAGAGCACAGACAACATCCAACTGGAGGTGGCTCGGCTAAGTACAGATGTTAATCTGGCGGATCTAAGCTTCCCCCAATCTGGACTAACCGGCAACTCCATTCATCTCTCAGCCAACACACTCAAACAGCAAGGACGCAATGGTGAGATCCGTATGGCGCTGGTTCTTTATAAGAACCTCGGCCAATACTTGTCCACAGAGAATGCAAGCGTGCGTCTTGGCAGCGAAGCCGTCTATCCAAACTATTCCCTGATAGTCAACTCACCTGTTATTACAGCAGCCATTAATAAAGACAGTAACAAGGTCTACTTGTCTGAACCTGTGGTCTTCACTGTCAAGCACATACAGCAGTCAGAAGAGAACTTCAATCCAAACTGCTCTTTCTGGAGTTACTCTAAACGCACCATGACAGGATTCTGGTCCACTCAGGACTGCAGACTGCTGGGCACCAACCGCACCCACACTTCTTGCTCCTGCACACACCTCACCAACTTTGCTGTGCTTATGGCCCATGTGGAGGTGAAGAAAGCAGACCAGGTGCATGAGCTGCTATTGGACGTCATAACATGGGTGGGGATCCTGCTGTCTCTGGTCTGCCTGCTCATCTGCATCTTCACCTTCTGTTTCTTCCGTGGTCTGCAAAGCGACAGGAACACCATCCACAAAAACCTCTGCATCTCCCTCTTTATTGCCGAAACCCTCTTCCTCACCGGGATCAACCGTGCAGACCAGCCTATCGTCTGCGCTGTGTTTGCGGCCCTGCTGCATTTCTTCTTCTTGGCTGCGTTTACGTGGATGTTTCTGGAAGGCGTACAGCTGTACATCATGCTGGTGGAAGTGTTCGAGAGCGAGTACTCGCGCACCAAGTACTTCTATCTCACAGGATATGGAGTGCCAGCTGTCATAGTAGCTGTATCGGCTGCTGTGGACTACCGTAGCTACGGCACTGAAAGAGTGTGCTGGCTCAGGTTAGATACTTACTTTATCTGGAGTTTCATTGGGCCTGCTACTCTCATCATCATGctgAATGTTATTTTTCTGGGCATTGCACTGTATAAGATGTTTCACCATACAGCCATTCTCAAGCCTGACTCCGGTTGCCTGGACAACATCAAGTCCTGGGTTATAGGCGCTATTGCTCTGCTGTGTCTGCTGGGTTTGACCTGGGCATTCGGGCTCATGTATATCAATGAgagcactgtcatcatggcctaCCTCTTCACTATCTTCAACTCGCTGCAGGGAATGTTCATCTTCATATTTCACTGCATCCTGCAGAAAAAGgtgCGTAAGGAATATGGCCGATGTCTCCGCACACACTGCTGCAGTGGGAAGAGTGTGGAGTCAACCATCTCCACCTCAACAAAGACAAGCACAGCCCGCACACCTGGACGCTACTCCACCAACTcacaaAGTCGTATTCGTAGGATGTGGAATGACACCGTCAGGAAGCAGTCAGAATCGTCTTTCATCACCGCTGATATGAACAGCTCAGCGACTCTCAATAGAGGTACCATGGCTAACCATCTCATCTCCAATGCTTTGTTACGTCCTCATGGCACTAATCCTTATAACACACTACTGGGAGAGTCTGCTGTGTACAATAACCCTACTGCCAACATGTTCAACACCCAAGAGGGCATTCTCAACAACGCACGGGACTCCAGCGTCATGGATACTCTGCCTCTTAATGGCAACCATGGCAACAGCTATGGTGTGGCAGCAGGAGATTACCTTACCTACAGTTCCCGTGGCAGCGAGCCACCAACTACGCTTGAGAAGAAGATCCTGAAAGAGCTGACGGCGAACTACGCTCCTTCATACCTGAACACACAGGAGCGACAGGGAAAAGCCCACCAGGGCACCCTGACAAATAAACTCAACAACCATCTGGCCAACGGAGGCGTCGCCGGATCTTCGTCCATCCCCAAAGACGATGTCATGGTGCTCGACAACCCTGGAGCGTTTCACCGGCATGATGACGGGGGTGGGTTAAGTCTGGAACTCATTCGGGAGGAGTCACAAGCTCCGCTCTTGCCACCGCGACCGCCCCCTCCTGAAAACCACGCCCCCTTGCACACGTTCACTGCCCATCGGCGCCTCCCACAGGAGAACAGCGAGAGCTTTTTCCCCCTTCTCCCCAATGACACACACtcttcccacacacacactccccgtgcgcacacacactctcCCCTCAGAGACTCGCTTTATACCAGCATGCCCACGCTCACCGACCTCCCGCACGGCACTGATGACCTCATCAACGGTCTCCATGACGATGAAGAcgaagaggaggaagaagacgGTGAGGAGGAAGAGGGCAGCGAGCTGCACTTGGCCAACGGCAAAGGGGTCATCATGGAGTCGGACGACGTGTACTACAAAAGCATGCCCAACCTGGGCTCCAGGAACCACATACAGGAACTAGAGAGCTACTATCAGATGGGACGTGGCGGCAGTGACGGGTTCATCGCCCCACCTGAGAAAGAAGACTCGTCGCCTGAAGAACAGCCACCAGATCCTTCACAACTGGTCACCAGCCTATAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0007626 locomotory behavior biological_process
GO:0007165 signal transduction biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7856 Predicted to enable G protein-coupled receptor activity and carbohydrate binding activity. Acts upstream of or within cellular response to estrogen stimulus and locomotory behavior. Predicted to be located in axon and plasma membrane. Predicted to be integral component of membrane. Is expressed in several structures, including central nervous system; eye; heart; liver; and ovary. Orthologous to human ADGRL3 (adhesion G protein-coupled receptor L3).

Ensembl:

ensembl_id ENSDART00000086797

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001950 lncRNA downstream 93848 22845289 ~ 22851419 (-) True XLOC_001217
TCONS_00001938 lncRNA downstream 293241 22651579 ~ 22652026 (-) True XLOC_001210
TCONS_00003411 lncRNA downstream 944217 21999781 ~ 22001050 (-) True XLOC_001204
TCONS_00001926 lncRNA downstream 1063499 21880255 ~ 21881768 (-) True XLOC_001201
TCONS_00003410 lncRNA downstream 1221907 21721834 ~ 21723360 (-) True XLOC_001200
TCONS_00001960 lncRNA upstream 156511 23267344 ~ 23268528 (-) False XLOC_001220
TCONS_00001966 lncRNA upstream 159026 23269859 ~ 23274040 (-) False XLOC_001220
TCONS_00001967 lncRNA upstream 160055 23270888 ~ 23271791 (-) True XLOC_001220
TCONS_00001972 lncRNA upstream 190447 23301280 ~ 23308262 (-) True XLOC_001222
TCONS_00003412 lncRNA upstream 306082 23416915 ~ 23436608 (-) True XLOC_001224
TCONS_00001951 mRNA downstream 83919 22857753 ~ 22861348 (-) True XLOC_001218
TCONS_00001949 mRNA downstream 93786 22845225 ~ 22851481 (-) False XLOC_001217
TCONS_00001948 mRNA downstream 110443 22805398 ~ 22834824 (-) True XLOC_001216
TCONS_00001947 mRNA downstream 142120 22770255 ~ 22803147 (-) True XLOC_001215
TCONS_00001946 mRNA downstream 209343 22730373 ~ 22735924 (-) True XLOC_001214
TCONS_00001958 mRNA upstream 132260 23243093 ~ 23268569 (-) False XLOC_001220
TCONS_00001959 mRNA upstream 154839 23265672 ~ 23268013 (-) False XLOC_001220
TCONS_00001961 mRNA upstream 156547 23267380 ~ 23274038 (-) False XLOC_001220
TCONS_00001962 mRNA upstream 158670 23269503 ~ 23274504 (-) False XLOC_001220
TCONS_00001963 mRNA upstream 158894 23269727 ~ 23274393 (-) False XLOC_001220
TCONS_00001939 other downstream 270654 22663723 ~ 22674613 (-) True XLOC_001211
TCONS_00001929 other downstream 753200 22191952 ~ 22192067 (-) True XLOC_001205
TCONS_00001923 other downstream 1264789 21680364 ~ 21680478 (-) True XLOC_001199
TCONS_00001916 other downstream 1417896 21526672 ~ 21527371 (-) False XLOC_001195
TCONS_00001899 other downstream 1932053 21011062 ~ 21013214 (-) True XLOC_001189
TCONS_00001973 other upstream 212169 23323002 ~ 23330066 (-) False XLOC_001223
TCONS_00001976 other upstream 229131 23339964 ~ 23340503 (-) False XLOC_001223
TCONS_00001977 other upstream 230138 23340971 ~ 23341690 (-) False XLOC_001223
TCONS_00001997 other upstream 1714314 24825147 ~ 24825263 (-) True XLOC_001235
TCONS_00002010 other upstream 2444892 25555725 ~ 25557930 (-) False XLOC_001242

Expression Profile

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