XLOC_001241 (sfrp2)


Basic Information

Item Value
gene id XLOC_001241
gene name sfrp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25491324 ~ 25496133 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002009
AGTAACCCACGGACGCTCAACTGAAGTAAAGATGCGTGCCTATCTGGCTCTGCTGGTTGCGCTTTCCATCCCGGGATATCTGGATGCGCTTCACGGATTATACGCCTTCGATCAGCCTGAGCTCTTTCAGAAAAAGAGCAACTGTAAGCCCATACCTACAAACCTGCTCCTGTGCCATGACATCGAGTACACAAACATGCGTCTGCCTAACCTCCTCGGACACGAGACCATGAACGAGGTTCTGCAACAAGCATCCTCCTGGACCCCTCTGGTGCAGAAACAGTGTCATCCGGACACCAAGAAGTTTCTCTGCTCTCTCTTCGCTCCGGTGTGTTTGGATGACCTGGACGAGCCCATCCAGCCGTGCAGGTCTCTGTGTGAGAGCGTGAAGAGCGGCTGCGCTCCGGTGATGGCCGCTTTTGGGTTCCCTTGGCCGGACATGCTGGACTGCAGGCGCTTCCCTTTAGATAATGACCTGTGCATACCGCCTGCTGGCGCTGATGCTTTAGTACCAGTCACTAAGGAAGtTCCAAGAGTATGTGATGCCTGCAAGGAAAAGCCTGAAAATGACAACGAAATTGTGGACAGCCTATGCAAAAATGACTTTGCTTTAAAGATCAAAGTCAAGGAGATCTCCTACATGAATGGTGACACCAAGATCATTCCAGAAACCAAGACCAAGATGATCTACAAGACGAATGGTGGCGTCACTGACCATGACTTTAGGAAGACGGTGCTTTGGCTAAAAGATGGTCTTCAGTGTGTGTGCGATGAACTAAATGACATCAATGCTGCTTATTTGGTGATGGGCCAGAAGATGGATGGAAATTTGGTCATCACATCGGTGAAACGCTGGCAGAAGGGTCAACGAGAGTTTAAGAGAATTTCTCGCAGCATTCGCAAACTTCAGTGCTAGGATTTGTCCACTTGAATCACTAGAGTGCTCAAATGATCTTACAAAATGAACACCTGTAACAATCACACTAGATACAGGAAGGTTTATTCAAGAGCCTTCTGTCTGCTTTACCAGTGCCATTATGAGAAATGAATGGTCAGAGCTCAGGATTGAGAATGGTGGATCTTTCAAAAAGCACCTAGTATAGATTCAGCCTCACCAGTTAATTTTTTCCTCATGAGTTTTACTTTACCTGTTATATTTACTACAAAACATATTTGCTTATTTCTCTACTTTAGGATAGTTaactttacaaaa

Function

symbol description
sfrp2 Predicted to enable Wnt-protein binding activity. Predicted to be involved in canonical Wnt signaling pathway; negative regulation of canonical Wnt signaling pathway; and non-canonical Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway and cell differentiation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including adaxial cell; axis; musculature system; sensory system; and solid lens vesicle. Orthologous to human SFRP2 (secreted frizzled related protein 2).

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0035567 non-canonical Wnt signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0017147 Wnt-protein binding molecular_function

KEGG:

id description
ko04310 Wnt signaling pathway

ZFIN:

id description
ZDB-GENE-061013-293 Predicted to enable Wnt-protein binding activity. Predicted to be involved in canonical Wnt signaling pathway; negative regulation of canonical Wnt signaling pathway; and non-canonical Wnt signaling pathway. Predicted to act upstream of or within Wnt signaling pathway and cell differentiation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including adaxial cell; axis; musculature system; sensory system; and solid lens vesicle. Orthologous to human SFRP2 (secreted frizzled related protein 2).

Ensembl:

ensembl_id ENSDARG00000070050

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002009 True 1213 mRNA 0.46 3 25491324 25496133

Neighbor

gene id symbol gene type direction distance location
XLOC_001240 arfip1 coding downstream 4753 25442699 ~ 25486571 (-)
XLOC_001239 fhdc1 coding downstream 52390 25399514 ~ 25438934 (-)
XLOC_001238 trim2a coding downstream 121043 25322445 ~ 25370281 (-)
XLOC_001237 tmem154 coding downstream 314099 25154076 ~ 25177225 (-)
XLOC_001236 fbxw7 coding downstream 346885 24870661 ~ 25144439 (-)
XLOC_001242 AL935184.2 coding upstream 59592 25555725 ~ 25558287 (-)
XLOC_001243 si:dkey-30k22.7 coding upstream 128625 25624758 ~ 25648568 (-)
XLOC_001244 fgg coding upstream 173666 25669799 ~ 25679383 (-)
XLOC_001245 NA coding upstream 213179 25709312 ~ 25714494 (-)
XLOC_001246 map9 coding upstream 241634 25737767 ~ 25749888 (-)
XLOC_001235 BX511127.1 non-coding downstream 666061 24825147 ~ 24825263 (-)
XLOC_001234 NA non-coding downstream 884562 24602332 ~ 24606762 (-)
XLOC_001230 NA non-coding downstream 1580318 23908717 ~ 23911006 (-)
XLOC_001229 NA non-coding downstream 1707555 23751953 ~ 23783769 (-)
XLOC_001225 NA non-coding downstream 2044024 23445485 ~ 23447300 (-)
XLOC_001247 CU929073.1 non-coding upstream 366833 25862966 ~ 25863639 (-)
XLOC_001256 NA non-coding upstream 687266 26183399 ~ 26185720 (-)
XLOC_001257 NA non-coding upstream 747372 26243505 ~ 26248287 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_10273821_10275599 SFRP2 coding CI01000300 null 10273449 ~ 10277495 (-)