XLOC_001238 (trim2a)


Basic Information

Item Value
gene id XLOC_001238
gene name trim2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25322445 ~ 25370281 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002002
GCTCCTCCTTTTGCCTTTTGACAGTAGGAGACGGCATAGTGAGTTTGTTATCCGTGGCTCACGTTTCATCAAGACAGAGAGAGATGAGTGGACAGACAGACACAATCTGACGACTTTATGTGCTACAAATTATCGGCTTGAGCAGGAGTGCAGACATGGAGTTCACGGCCCAGGCTGAAGGAGTGTGGGAGGTATTTGATAGAGTGTTAGGATGGCCACTGACGCTTCTACCCTCCCAAGTCCCGTGGTGCGTCAGATCGACAAACAGTTCCTGATTTGCAGCATATGTCTGGATCGCTACAACAATCCCAAGGTCCTTCCCTGTCTTCACACCTTCTGTGAAAGGTGTCTGCAAAACTACATTCCTTCCCACAGTCTGACTCTGTCTTGCCCGGTGTGCCGTCAGACCTCCATCCTACCGGAGAAAGGTGTGGCGGCACTTCAGAGTAACTTCTTCATCACCAACCTAATGGAGGTGCTAAAGAAGAGCCCAAACTCAAACCTGAGTGAGGACTACACTGATGCTATCAACGGAGTGGCCACTGGACAGCCCCTCTCCTGTCCCAATCATGGAGGAAATGTCATGGAGTTCTACTGTCCGCCGTGTGAGACAGCCATGTGTGAAGAGTGCACTAGTGGTGAACACGCAGAACATGCCACCGTCCCACTGAAGGATGTTCTAGAACAGCACAAAGCCTCGCTACAGGAGCAGCTGGATGCGGTCAAGAACAGactgccGGAAATTGAATCTGCGTTGGAGGTTCTGTCTGAGATTCTGCAGCAACTGAGCAGTCAGAAGAGTTCAATTGAAGAAATGATTCATGCTACTTTTGAGGAGCTTCAGAAGACTCTGAATGTGCGCAAGAGTGTCCTGCTGATGGAGCTAGAGGTCAACTACGGACTCAAGCAGAAGGTGTTGCAAACTCAGCTGGAGTCGCTGCTGCAGGGGCAGGATGGCATACGCAGCAGCTGCAGCTTCACCGAACAGGCTCTTAATCACGGCTCTGAAGCTGAAGTCCTATTGGTCAAGAAGCAGATGAGCGAGCGTCTGGATGAGCTGGCCAATCAGGAGCTCCCACTGCGGCCAGAGGAGAACAATCAACTGGACTTCCTGGTGGAGACTGACGGTCTTCGCAAATCCATCCACAACCTTGGTGCCATTGTAACAACCAATGCTGTTGCAGCAGAAACTGTAGCCACCGGTGAAGGCCTGAGGCACTGCATTGTGGGACAGCTGACGTCTGTCACAGTAACAACTAAAGACAGAGACGGCGGGCTGTGTCGGACTGGAAATGCTCTGCTCATAGCTGATCTTTCTGCTATTGATGGCAGCATCGTGGGTGAAGGCAAAGTCACGGATCATAAAAACGGCACTTATGAGTTTGTATACAGTGTCCCATGTGAGGGCCGCTTCACGCTTACCCTCAAGCTCTATGATCAGCACATCAGGGGCAGCCCATTCAGCATACGAGCCAACAAACCCACAGACATCTCTCTTACTGCAGATGTGGACAAAAAACGGCTCAAGTCTCCAGGAAACAGCCATGTGAAGCAGCGGGCCATCAAACGGCCTGCCAGCATGTACAGCACCGGCAAACGGAAAGAAAACCCAATTGAAGATGACCTTATATTCCGAATCGGAACAAAAGGCAGAAATAAGGGTGAATTTACCAATCTCCAGGGAGTTGCTGCTTCTTCTGTTGGCAAAGTCTTAATAGCGGATAGTAACAATCAGTGTGTTCAGATATTTTCAAATGATGGCCAGTTTAAGAGTCGTTTCGGAATCAGAGGCCGATCACCGGGACAGCTTCAACGGCCTACTGGTGTTGCTGTGCACCCCAGTGGTGACATCATCATTGCTGACTATGACAACAAATGGGTCAGCATTTTTTCCAGTGATGGCAAGTTCAAGAGTAAAATTGGCTCAGGGAAGCTCATGGGTCCTAAGGGTGTATCTGTTGACAGAAATGGCCACATCATTGTGGTAGACAATAAATCTTGCTGCGTCTTCATTTTCCAGCCTAATGGAAAACTGGTCTCCAAGTTTGGCAACCGAGGCAACAGTGACAAGCAATTTGCAGGTCCTCACTTTGCAGCAGTGAATCAGAATAATGAAGTCATTGTGACCGATTTCCACAATCATTCTGTAAAGGTGTTCAGTCCAGAGGGTGAATTCATACTGAAGTTTGGCTCAAACGGTGAAGGAAATGGACAGTTTAATGCTCCAACGGGTGTGGCAGTAGATGCCAATGGTAACATTATAGTGGCTGACTGGGGCAACAGCAGGATCCAGGTGTTTGACAGCAGTGGATCATTTCTGTCCTACATCAACACATCCGCAGACCCTCTTTATGGCCCACAAGGTCTGGCTCTGACCTCAGATGGCCATGTTGTGGTGGCAGACTCTgggaaccactgttttaaagTATACCGTTATCTACAATAGCACTCTCATCTCTACAAATAAACACTTGCACTTATTCCTTAACGCTGCCGCCCTTGTGCCAAACCTAGACCCTCGTATTGCATTGAAGTTGTGTTGTTGTGGCCTCGTTTGTGACACCCTCACCTTTAAGAAAATGAAATGAGCTTCTGTTTCTTCGTCATAATAGGTTAcaagtttaaaaaacaacaatggTTTCAttatttaaaggaacagtttacCAAAAATATGAATTCTGCTATTTACCCTCAGGTTGTTCAAATACAATGTCCTATAAAACATGCTTTATACTGACCCTGATCCTTCAAGTGAATTATGACCACAAATGCTGCTCTATATTCTTAGTCATATGAAGAAGTTATGATGAATTCTCCAAAATTTGTTGCAAATCAACAATCTCTAAAATCAAATCTAGTATTTTGAGGGATTATAGCACTGACATATTTTGTGCTTCATTTGTATATCAAAGTAagcaataaatatattattagctTGTATTATAAAATGatgtaataataattcataaaaataacaaaaccttacatttatatagcacttttctggacactcaaatcgctttacacaattttaggggaatctcctcatccaccagcagtgtgcagcatccacagtgctcattgagcag

Function

symbol description
trim2a Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within myeloid cell differentiation and primitive hemopoiesis. Predicted to be located in cytoplasm. Is expressed in blood cell and vascular endothelium. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2R. Orthologous to human TRIM2 (tripartite motif containing 2).

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0060215 primitive hemopoiesis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-99 Predicted to enable ubiquitin protein ligase activity. Acts upstream of or within myeloid cell differentiation and primitive hemopoiesis. Predicted to be located in cytoplasm. Is expressed in blood cell and vascular endothelium. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2R. Orthologous to human TRIM2 (tripartite motif containing 2).

Ensembl:

ensembl_id ENSDARG00000031817

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002002 True 3089 mRNA 0.46 12 25322445 25370281

Neighbor

gene id symbol gene type direction distance location
XLOC_001237 tmem154 coding downstream 145220 25154076 ~ 25177225 (-)
XLOC_001236 fbxw7 coding downstream 178006 24870661 ~ 25144439 (-)
XLOC_001235 BX511127.1 coding downstream 497182 24825147 ~ 24825263 (-)
XLOC_001234 NA coding downstream 715683 24602332 ~ 24606762 (-)
XLOC_001233 gatb coding downstream 763607 24520503 ~ 24558838 (-)
XLOC_001239 fhdc1 coding upstream 29233 25399514 ~ 25438934 (-)
XLOC_001240 arfip1 coding upstream 72418 25442699 ~ 25486571 (-)
XLOC_001241 sfrp2 coding upstream 121043 25491324 ~ 25496133 (-)
XLOC_001242 AL935184.2 coding upstream 185444 25555725 ~ 25558287 (-)
XLOC_001243 si:dkey-30k22.7 coding upstream 254477 25624758 ~ 25648568 (-)
XLOC_001230 NA non-coding downstream 1411439 23908717 ~ 23911006 (-)
XLOC_001229 NA non-coding downstream 1538676 23751953 ~ 23783769 (-)
XLOC_001225 NA non-coding downstream 1875145 23445485 ~ 23447300 (-)
XLOC_001245 NA non-coding upstream 339031 25709312 ~ 25714494 (-)
XLOC_001247 CU929073.1 non-coding upstream 492685 25862966 ~ 25863639 (-)
XLOC_001256 NA non-coding upstream 813118 26183399 ~ 26185720 (-)
XLOC_001257 NA non-coding upstream 873224 26243505 ~ 26248287 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_10176172_10189470 TRIM2, TRIM2A coding CI01000300 null 10175937 ~ 10189889 (-)