XLOC_001250 (synpo2b)


Basic Information

Item Value
gene id XLOC_001250
gene name synpo2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 25959084 ~ 25966411 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002025
GGCTGTGTTGTGTAGAAATAGAAAAGTGTTGTCAAAGATAAGAAGCCCTTCAAAGCATAAGGCTCTCTGTGGTCACTTGAATAATGGGTCTCTTAACATCTTTTGACAAGTCACTGACATCAGCATTTGAAGCCCTCTCCAGGATGACAAGGCGACTCTTCGCTTCCACACAGATATGAACTGCTATCATAGTACCTGCTGTACTTCTCCATATTTGAACAGTCAACAGCACACGGCAGCTCTTCTACTGCAGGCGTAGGACAGAGAAGAAGGAGGAGGGAGAGGTGAAGGACCTCCTGTGTGTCAAGTGGAATCTGGGGTGCTGAGCAGGCAGAGCGGAGGGGGAAAGTCTCCTTGACGGTGCAGACCAGACTCAGCAGACACCAAGCAAGACAGGACTAAAATGGAGATACAGTTGGCATGACAGCTGGAAAAAAGTCAAccctaaatgtaaaaataacactGCTTTTTACTGTGGCCAACAGCAAGAGGGTGTTGATTTTTAAGACGTGTCAACAAAAGGGTCAGAAGGTAACACTGGTTAGCCACAGTATATCTAAATGACAGATTTCGGGACAGGAAAGACATTGTACACCACAAAGTAAGTCAGGATTTACACTCTCATCAAAGACATTTCAATGCTCAGAAACAAAGTACCACTTTGAGCTACATCAGAATATCTTATTATTAACTAAATAACTTTGAGACAATGGAGCATCTTCCACAGACAAAAGGCAAAGGAGTTTTGATGTTTGCCAAGAGGCGTCAAAGGATGGATGAGATTTCTGCAGAACATGAGGAAATGAGACGAAAAGGCATACCAGTTGATGCAATTGAGGAAACAAAAAGGGAAATTGTGATGCCTCCTCCTCAAGAAAGTAAACAATCCCCACAAGATTTCTATGCAAGGCAAGAGAAGCATTATCAAGGGCAGCCATTTCAGCTACAGATGTTGCAACAATCAGCAAACAGCATGAATGGTCTGGATCCACACCAAGGTTCGGCTGTTCCAAAACCCCTTGTGTCCAACAGAACTGCTAAACCCTTCTTTAGCGGTCATAATCAAGGCCAAAAAACTTTTTCACCAGTTAGAGGTGTCTCAAGCCCAACATCTAAAAAACCTGAAAACATATTCAAGGTTCCTATTCCGGTAAACACAACACCAAACGTTTGGTCTCCCACATCAGACGTTATTGCCTCTCGTGATGAACGTATTGCCATTCCTGCTATTAAGACAGGGATCTTGCCAGAAACAAAAAGGAGAGGAGCAAACAAGACAGACTTAAAAGAAAGGCCTCTACATCAGAAGAAAAGAGATGAAAAGTCCTTAACAGAGTTCGTTCAAGAGGAGGACCTTCTCAGTCTAGGCGCTGAAGCATGCAATTTCATGCAAGCTCCAACAGTCAAGCAGAAAAATCCTCCACCTGTCCTACCCAAACCTGTTATCAACCCAGCTCACCCTCTCTGGTCTGCAGATGGTCATGCCGTTTCAACGAGCCTCCTAATGACATCAAGTTCAGCTCAAGCTATGGGGCACAATCAGGTGCAGGCGGGCCATACAAAACAGCACCCTGCTGCAGCCTGGACTCCAGAACCACATCAGACACCACATAAACTTCGTGCTGGTCCCTCCAAATCCAAAACCCCATGGATAAAGTCACAAAGTGAAGAGAACTCTGTTGCTTCCTGCCCACCCCAACATCTTAGCACATACCTTCCAGCATCAAAGGCCCCATCAGCTTCTCATCAAGAGTATTCATCAGAAACAGGTGCATCTGAGGGTCTGAACCTTAAAGGAAAAGGAGCTGAACTGTTTGCACGGAGACAAACTCGTATGGAAAAATTCATTGTGGACAATGAGACTGTGCGAACCAATAAGGTCAGACCCTCATCACCAACGCTCTCAATGCCAAGCACCTGGAAATACTCTTCTAACATCCGTGCACCACCTCCAGTGTCCTACAACCCTATTTTATCACCCTTTTATCCCCTTGCAGCAGTTAAACAACCCCCACCTGCGACTAGTCCAAAGACAAAGCCGAAGGTAAACAAGGAGAAGAAGAATCCTCCCCCCAAGCATCTCAATGTTCTGGATGTCATGAAACATCAGCCTTACCAGTTGGATTCCTCCCTATTCACCTACAACTTTACACCAGAGGTTGAAGAAGCAGTTTCTCCTAAAGACTCAAAGCCAACTTCAGCAAATAGTTCTTCCAAAATTTCACAAACAGATAAGCAAAATCCATCTAAAGCCACTGGAGAGGGTTTCAGCCGATGCCGTTCCTTGTCATCTCCAATGACCCATAATTTGCTGAGCAGGCAGTTTTCATGGGTAGAACAGCCCAAAACACCACTGTCGTCTATGGAAGCGCTTGCTTCAGTGCCTCTAAATGAGTCCAAAATGTCTGCCACTCATAGAAAATCATTACCAGAAACACCAGCAGAATGGAAGGAAAGAGTTTTCTACGAGTCACTTGGTGGTCCACAGGATATGCCCCCTGTTGTAGCTGTTACATCCTGCATCAACAGCTTTTTTTCAGTGCCAAAAGATCCTGTCGTACATGGGACGACTTTTTGTCCTTCACAGCCTCTGGTGACAAGCAAAAGGTACAGCAGAGGTAGTTCTCTGCCAAACAGTTACACACTTCAAAAAAACCATCCACAGTCACATAGAGTCAGCTGgaaactgtaatcaaattaataTCGTAGTCAAATTCAGTCAGAGAATAGAGCTTACAAAAAGTATTTTATGAGTTGTTTGATGTTTATCCATGTATGCCCATAAacgttttatgtgtgtgtttttgctgttgttttaaaattgttttgatgttttaaaattggctactgaaaaaaaactgttattctGTGTCTTTACTTTGTAATTTAAGTTTAAAACTAATATCCTGCAAGATAactaataaaatgtgatttactaTTATCATGGCAAAGGCAAAAAaattagggtaacactttacttgggGTATTCATAAGAACATCATGATACatttataatgataatataacatgagattttatgcatgcttatgacaagtgtcattaagtgtcattagcTCAGTGTTGTCATTTTTAATGCAAAGGTGACAGTTTGATATCATAAATACATCACAACTTGACACAGTGCCAAAACAacatgtcataaatctgtcataaacatgattttcaTGACTCCGTTATAACTGTGTTATGAATATTTTCTAATCACTTTCTTCAGAGTAACAAACTGAATTGTCATTAAAATTTTACATTAGAAGTGCCAATACTCAAATAAATTTAAACCAATACAAG
>TCONS_00002026
GGAAAGTCTCCTTGACGGTGCAGACCAGACTCAGCAGACACCAAGCAAGACAGGCACGACTAAAATGGAGATACAGTTGGCATGACAGCTGGAAAAAAGTCAAccctaaatgtaaaaataacactGCTTTTTACTGTGGCCAACAGCAAGAGGGTGTTGATTTTTAAGACGTGTCAACAAAAGGGTCAGAAGGTAACACTGGTTAGCCACAGTATATCTAAATGACAGATTTCGGGACAGGAAAGACATTGTACACCACAAAGTAAGTCAGGATTTACACTCTCATCAAAGACATTTCAATGCTCAGAAACAAAGTACCACTTTGAGCTACATCAGAATATCTTATTATTAACTAAATAACTTTGAGACAATGGAGCATCTTCCACAGACAAAAGGCAAAGGAGTTTTGATGTTTGCCAAGAGGCGTCAAAGGATGGATGAGATTTCTGCAGAACATGAGGAAATGAGACGAAAAGGCATACCAGTTGATGCAATTGAGGAAACAAAAAGGGAAATTGTGATGCCTCCTCCTCAAGAAAGTAAACAATCCCCACAAGATTTCTATGCAAGGCAAGAGAAGCATTATCAAGGGCAGCCATTTCAGCTACAGATGTTGCAACAATCAGCAAACAGCATGAATGGTCTGGATCCACACCAAGGTTCGGCTGTTCCAAAACCCCTTGTGTCCAACAGAACTGCTAAACCCTTCTTTAGCGGTCATAATCAAGGCCAAAAAACTTTTTCACCAGTTAGAGGTGTCTCAAGCCCAACATCTAAAAAACCTGAAAACATATTCAAGGTTCCTATTCCGGTAAACACAACACCAAACGTTTGGTCTCCCACATCAGACGTTATTGCCTCTCGTGATGAACGTATTGCCATTCCTGCTATTAAGACAGGGATCTTGCCAGAAACAAAAAGGAGAGGAGCAAACAAGACAGACTTAAAAGAAAGGCCTCTACATCAGAAGAAAAGAGATGAAAAGTCCTTAACAGAGTTCGTTCAAGAGGAGGACCTTCTCAGTCTAGGCGCTGAAGCATGCAATTTCATGCAAGCTCCAACAGTCAAGCAGAAAAATCCTCCACCTGTCCTACCCAAACCTGTTATCAACCCAGCTCACCCTCTCTGGTCTGCAGATGGTCATGCCGTTTCAACGAGCCTCCTAATGACATCAAGTTCAGCTCAAGCTATGGGGCACAATCAGGTGCAGGCGGGCCATACAAAACAGCACCCTGCTGCAGCCTGGACTCCAGAACCACATCAGACACCACATAAACTTCGTGCTGGTCCCTCCAAATCCAAAACCCCATGGATAAAGTCACAAAGTGAAGAGAACTCTGTTGCTTCCTGCCCACCCCAACATCTTAGCACATACCTTCCAGCATCAAAGGCCCCATCAGCTTCTCATCAAGAGTATTCATCAGAAACAGGTGCATCTGAGGGTCTGAACCTTAAAGGAAAAGGAGCTGAACTGTTTGCACGGAGACAAACTCGTATGGAAAAATTCATTGTGGACAATGAGACTGTGCGAACCAATAAGGTCAGACCCTCATCACCAACGCTCTCAATGCCAAGCACCTGGAAATACTCTTCTAACATCCGTGCACCACCTCCAGTGTCCTACAACCCTATTTTATCACCCTTTTATCCCCTTGCAGCAGTTAAACAACCCCCACCTGCGACTAGTCCAAAGACAAAGCCGAAGGTAAACAAGGAGAAGAAGAATCCTCCCCCCAAGCATCTCAATGTTCTGGATGTCATGAAACATCAGCCTTACCAGTTGGATTCCTCCCTATTCACCTACAACTTTACACCAGAGGTTGAAGAAGCAGTTTCTCCTAAAGACTCAAAGCCAACTTCAGCAAATAGTTCTTCCAAAATTTCACAAACAGATAAGCAAAATCCATCTAAAGCCACTGGAGAGGTAAGTGCTGTATACCCGTTTGTCCGCCAGACTACATCAAATGAGACTGCTGCTGTTGCCCCACAACAATTAGATGGAAAACAACTTAACATGTATGATGGTACTAGAAACAAAGGCATCTTCAGTGTCCGTCTGCCTCCTGGTAGCTCTGGTGGCAATGTTTCTGTAGGATCTTCTGCACTTGAAAATAATCAATATGCTTCACGATCTGTATTACCAGTTGCCCCAAGACCAAAGTTTTCAGCCAAAAAGTCGAACATGACAGGCAAGCAATGGAAACCGATGATTCTGCAACATTAATTGAGCTTTAAAAGGGTCATGACATggtgttaattaattaaaatttaattttttcattcacATGGtcattaaaatacttttaattatTGCTTTTTAGGTTAATGCGTGTTTCTTTTGAGCTCAACGCATAATACTTGCAAATATTTCTGTGATTTAGGGTATAAAATGATTTGATTAGATTAATATTCTTGATTTTATTAGCTTCACAATTTTCTTGTTATGTTTCCATGTGATACAAAATGGgagttgaatttatttttaaacagttttttttttcttttttttaaataagagtttTGGCAAATATCAAACCTGTTTCCTTTTCccaatgaaaaaatatttgctAGCATTAAATGCTATGTTTAGGTTCAGTGTCAGAGCAATACACTAAAAATGCATCCCTCTTTTGCTATATCATTAGATATTAGGTTTGGAACTTTTTCACAGATTGCATTTCAACAAGGTTGTATTTTAGActtcatcagacatttttttaacattgttttatttagttttctttgGAAACTCAGGCCAGCCTAAAATATAATTCAGagatatttactattattatgtgcTTTGTAAATTATAAACTATTTGTAATGTGTTTAGCAGACCCTTCTGTTCAAATACTGAGAAAAATACGTATGTATAAAATTTGCTCATTCATTTGTCTCAAGTCAAATATGATTGAACTGTATTACTACTTTTCTGGTTTCTTCTTTTCTTGATATTTCAAAACTACTGCATTGCCTGATCCTTCACTTTAATAAAATTTTCCATCTTTCTTtgctttatttgtcttttttgatCTTTCCCGCATTTCACCACAGCTCATTTTCTACACACATCCACTTGTCCTACAAAGACACATTGTAGTCTTTAACGGGTCTAGTCTTTATTCTGTGTGGCTGATTTTA
>TCONS_00002027
GGCAGAGCGGAGGGGGAAAGTCTCCTTGACGGTGCAGACCAGACTCAGCAGACACCAAGCAAGACAGGACTAAAATGGAGATACAGTTGGCATGACAGCTGGAAAAAAGTCAAccctaaatgtaaaaataacactGCTTTTTACTGTGGCCAACAGCAAGAGGGTGTTGATTTTTAAGACGTGTCAACAAAAGGGTCAGAAGGTAACACTGGTTAGCCACAGTATATCTAAATGACAGATTTCGGGACAGGAAAGACATTGTACACCACAAAGTAAGTCAGGATTTACACTCTCATCAAAGACATTTCAATGCTCAGAAACAAAGTACCACTTTGAGCTACATCAGAATATCTTATTATTAACTAAATAACTTTGAGACAATGGAGCATCTTCCACAGACAAAAGGCAAAGGAGTTTTGATGTTTGCCAAGAGGCGTCAAAGGATGGATGAGATTTCTGCAGAACATGAGGAAATGAGACGAAAAGGCATACCAGTTGATGCAATTGAGGAAACAAAAAGGGAAATTGTGATGCCTCCTCCTCAAGAAAGTAAACAATCCCCACAAGATTTCTATGCAAGGCAAGAGAAGCATTATCAAGGGCAGCCATTTCAGCTACAGATGTTGCAACAATCAGCAAACAGCATGAATGGTCTGGATCCACACCAAGGTTCGGCTGTTCCAAAACCCCTTGTGTCCAACAGAACTGCTAAACCCTTCTTTAGCGGTCATAATCAAGGCCAAAAAACTTTTTCACCAGTTAGAGGTGTCTCAAGCCCAACATCTAAAAAACCTGAAAACATATTCAAGGTTCCTATTCCGGTAAACACAACA

Function

symbol description
synpo2b Predicted to enable actin binding activity. Predicted to be involved in positive regulation of actin filament bundle assembly. Predicted to be active in Z disc; actin cytoskeleton; and nucleus. Is expressed in myotome. Orthologous to human SYNPO2 (synaptopodin 2).

GO:

id name namespace
GO:0032233 positive regulation of actin filament bundle assembly biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0030018 Z disc cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101230-1 Predicted to enable actin binding activity. Predicted to be involved in positive regulation of actin filament bundle assembly. Predicted to be active in Z disc; actin cytoskeleton; and nucleus. Is expressed in myotome. Orthologous to human SYNPO2 (synaptopodin 2).

Ensembl:

ensembl_id ENSDARG00000077157

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002025 False 3309 mRNA 0.42 3 25959084 25966411
TCONS_00002026 False 3141 mRNA 0.40 2 25961376 25966068
TCONS_00002027 True 833 mRNA 0.42 2 25963694 25966082

Neighbor

gene id symbol gene type direction distance location
XLOC_001249 myoz2b coding downstream 22405 25917591 ~ 25936679 (-)
XLOC_001248 usp53b coding downstream 47183 25886437 ~ 25911901 (-)
XLOC_001247 CU929073.1 coding downstream 95445 25862966 ~ 25863639 (-)
XLOC_001246 map9 coding downstream 209196 25737767 ~ 25749888 (-)
XLOC_001245 NA coding downstream 244590 25709312 ~ 25714494 (-)
XLOC_001251 si:ch211-145b13.5 coding upstream 45068 26011479 ~ 26023678 (-)
XLOC_001252 si:ch211-145b13.6 coding upstream 58881 26025292 ~ 26027337 (-)
XLOC_001253 gpank1 coding upstream 69712 26036123 ~ 26045584 (-)
XLOC_001254 pdcd4a coding upstream 79737 26046148 ~ 26071535 (-)
XLOC_001255 cdkn2a/b coding upstream 161407 26127818 ~ 26131088 (-)
XLOC_001242 AL935184.2 non-coding downstream 400797 25555725 ~ 25558287 (-)
XLOC_001235 BX511127.1 non-coding downstream 1133821 24825147 ~ 24825263 (-)
XLOC_001234 NA non-coding downstream 1352322 24602332 ~ 24606762 (-)
XLOC_001256 NA non-coding upstream 216988 26183399 ~ 26185720 (-)
XLOC_001257 NA non-coding upstream 277094 26243505 ~ 26248287 (-)
XLOC_001259 CU570873.1 non-coding upstream 384115 26350526 ~ 26350641 (-)
XLOC_001263 NA non-coding upstream 588469 26554880 ~ 26595059 (-)
XLOC_001264 NA non-coding upstream 607018 26573429 ~ 26575260 (-)

Expression


Co-expression Network