RNA id: TCONS_00002033


Basic Information

Item Value
RNA id TCONS_00002033
length 1302
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_001253
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 26036123 ~ 26045584 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCTACAAAGTAATAGTCAAAAATCGACACAAGAATGAGAGCGTTGTGTTTACTGGACTATCTTGGGCATGAGCTGCAGTCGTAGGATTTTTCATTTGTCTATTTAATAGCAAAGTGTTAAAGATGAACAACCCAGTCTACTTCACCAGAGCCAAACAAGAGGAGACGCTCTggatagaaaaaaagaaagaagacaagCAAACAATTTCTGGGGTTGAGGCCAGAGACTTTTACCAAAGCCTCTTacaagagagagatagagaaaggCCAAGAGatggagaagcagcagcaagTAGAAGAGCAAAAAGACGAACAGAACCCAATCGAAGAAGAAGAGAAGCAAGAAGGCTAGAAGCTTCCACTGTGCAGCCAGTTTGCACGGAGCGTGATGGACACAAACTCCTGCAGTGCGCCCAGGAAGGCAACATTCGGGCCCTGAAAGACCTCTTACGACGTGGCTGTGATGTCAACTTCCGGGATGATTTTTTCTGGACAGGTGTGATGTGTGCGAGTCAGGCAGGACAAACAGAAGCCGTTCGGCTGCTCCTGGAGCATGGGGCCGCTTGGGTTGGAGTCGTGGACAAACAGgGCAGAGATGCTCGAGATCTGGCGCTGCAGGCCGGTCATCAGGATGTAGTGAGGGAGTTGGAGCAATTTAATGTGCCAGAGACCACAAACACATCTATAACAAACAATGCAGACAGTGTTACTTCTCAGTGGTGTAATGTGTGTGCTGTACATTACACAGACAGCACTGAAACCCACAACAGATCCACACTGCATCAATTCAGTGAACTTCATCCTCCAGCCACCCCTCAATACTGCCTGCCCTCATCCAGCACCAGCTATAAAATGATGCTCCGCTTGGGGTGGGACCCTTCCTCTGGACTTGGACCTGGCCACTCTGGCCGCAAAAACCCAGTAAGCACGATACTAAAGAGAGATCAGGCGGGTCTGGGATATGGGACTGCCCCGCAACCCAAAGTCACTCACTTCCAGCCCAAAGATCCTCAGGCAGTGCGGCACATATTTAAAGAGAAAAGACTGAGACAGGAGAGAGGGTCCACACTCAGTGCTAAAGAACTTAAGAAGAAAGAAGACAGAGACAAGAGATGGGAGATAGACTACCGTTCCTCGTTTAACTTTGACTTTTGACCTACCATGCTCTTTAAcaatatttcatacattttttaaagataattacGTTGTCAGTTTAATGAAATAGTCTTCAGTTGTCTGGTGCTGCCTGACAGTAAGAAATGTTTTTCAGCCATTAAATACAATAGGGTCTCTAGCTGAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070928-32 Predicted to enable nucleic acid binding activity. Orthologous to human GPANK1 (G-patch domain and ankyrin repeats 1).

Ensembl:

ensembl_id ENSDART00000193593

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002019 lncRNA downstream 172484 25862966 ~ 25863639 (-) True XLOC_001247
TCONS_00003418 lncRNA downstream 321629 25709312 ~ 25714494 (-) False XLOC_001245
TCONS_00002014 lncRNA downstream 360024 25672442 ~ 25676099 (-) False XLOC_001244
TCONS_00003417 lncRNA downstream 477836 25555725 ~ 25558287 (-) True XLOC_001242
TCONS_00002008 lncRNA downstream 549704 25478767 ~ 25486419 (-) True XLOC_001240
TCONS_00003420 lncRNA upstream 137815 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00003419 lncRNA upstream 137815 26183399 ~ 26185720 (-) False XLOC_001256
TCONS_00002953 lncRNA upstream 197921 26243505 ~ 26248287 (-) True XLOC_001257
TCONS_00002053 lncRNA upstream 349532 26395116 ~ 26398289 (-) True XLOC_001260
TCONS_00002954 lncRNA upstream 509296 26554880 ~ 26595059 (-) True XLOC_001263
TCONS_00002029 mRNA downstream 8786 26025292 ~ 26027337 (-) False XLOC_001252
TCONS_00002030 mRNA downstream 8796 26025335 ~ 26027327 (-) False XLOC_001252
TCONS_00002031 mRNA downstream 9167 26025420 ~ 26026956 (-) True XLOC_001252
TCONS_00002028 mRNA downstream 12445 26011479 ~ 26023678 (-) True XLOC_001251
TCONS_00002025 mRNA downstream 69712 25959084 ~ 25966411 (-) False XLOC_001250
TCONS_00002036 mRNA upstream 564 26046148 ~ 26062798 (-) False XLOC_001254
TCONS_00002037 mRNA upstream 564 26046148 ~ 26063188 (-) False XLOC_001254
TCONS_00002038 mRNA upstream 1771 26047355 ~ 26071535 (-) False XLOC_001254
TCONS_00002040 mRNA upstream 82234 26127818 ~ 26131088 (-) False XLOC_001255
TCONS_00002041 mRNA upstream 83469 26129053 ~ 26131088 (-) True XLOC_001255
TCONS_00002024 other downstream 99482 25918274 ~ 25936641 (-) True XLOC_001249
TCONS_00002016 other downstream 324320 25709813 ~ 25711803 (-) True XLOC_001245
TCONS_00002015 other downstream 359783 25675697 ~ 25676340 (-) True XLOC_001244
TCONS_00002010 other downstream 478193 25555725 ~ 25557930 (-) False XLOC_001242
TCONS_00001997 other downstream 1210860 24825147 ~ 24825263 (-) True XLOC_001235
TCONS_00002039 other upstream 5897 26051481 ~ 26063159 (-) True XLOC_001254
TCONS_00002042 other upstream 138155 26183739 ~ 26185594 (-) True XLOC_001256
TCONS_00002044 other upstream 207324 26252908 ~ 26294703 (-) False XLOC_001258
TCONS_00002048 other upstream 304942 26350526 ~ 26350641 (-) True XLOC_001259
TCONS_00002049 other upstream 343569 26389153 ~ 26394460 (-) False XLOC_001260

Expression Profile

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