XLOC_001188 (BX323083.2)


Basic Information

Item Value
gene id XLOC_001188
gene name BX323083.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 21000784 ~ 21005933 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001894
GAAGGAGTTCCTCAGACAGGAAGTGGAGACCAGTACTTTAGGAAgccctgctgctgctgttgctgagTGTCTAGAGCACCTGCAGTCCAGATACTGGATCTCTGCTCACCTGCACTCGACTCAACTCTGATGCAGCACCAGATTGTGGAGGAATCTTCTAGGAGAAGCTTGAGTTTGATCCAAAATGGCTGGCCATCCTGAATTGGACAGACAAACCTTCAGAAACCAACCCACAGTTGCTGGAACCCCTTCGCTGGACAACAGACAACACAGCAGATACAAAACACATGACAATGATCACAGTTGCTCATTTTCTGAAAGCTTTCTGATACCACATATTCGTTtctatttctaaatgttttagcATCCTGTTCCTCTGCTTCTTTCAGGTGGGATTTCAG
>TCONS_00001895
TGATCGATTCTGATCATCCCGCTGCACAACTCTGAGCAAATCTCCCCTTGGCTGAGTTACATCAGTTTGGAAAGTTGTTTTGGAGTTGTTGATGATGACGCTGCGACGCTCACAGAGGACCAGGACTCTCCCCGGACACCTCAGGGACTTCTTGCTGGAGCGACACCTCAAGAACGCGGCTGTCCTTCCTGCCCTTCGTCCCGCAGCCCCAGTCCCGCCAGTGGGTGAGTGTCTGCAGGAAGAGCCGCTGTCCATCCACGGCCGGAGTGTGGAGGAATACCAGGGCATCTACCGCAGTGTGATGGACTCCACAGTGAAGAAGCCTGCTGGCCGATACACCCTTCAGAAAGGATTGGAGgtaaagcagcggctgtgggagaagCTGGGCCGGCCTGCGCTGCTGGAGACCGAGCAGCCTGATGGACGTGTGCTCATCACGGAGATCAGGTCCGAGTCCAGCGTCCCCCCTCAGATCAAGGTGGACATTAGCAAGGAGCCACTGCCCAAGGAGCCCCGGAGGAAGAGGCCCAGGCACTGAGCCATCCTAGTGCCAGATGAAGGATCATGGGCacGAAGGAGTTCCTCAGACAGGAAGTGGAGACCAGTACTTTAGGAAgccctgctgctgctgttgctgagTGTCTAGAGCACCTGCAGTCCAGATACTGGATCTCTGCTCACCTGCACTCGACTCAACTCTGATGCAGCACCAGGTTAAGAAAAATGAATAACTCTGCCCCGAAGATCAGCAAGTTTCTCTAAGTTGACTAATGTCTTCATTCTGAAGATTGTGGAGGAATCTTCTAGGAGAAGCTTGAGTTTGATCCAAAATGGCTGGCCATCCTGAATTGGACAGACAAACCTTCAGAAACCAACCCACAGTTGCTGGAACCCCTTCGCTGGACAACAGACAACACAGCAGATACAAAACACATGACAATGATCACAGTTGCTCATTTTCTGAAAGCTTTCTGATACCACATATTCGTTtctatttctaaatgttttagcATCCTGTTCCTCTGCTTCTTTCAGGTGGGATTTCAG
>TCONS_00001896
GTAGGAATTAAATGCATAATTAGAAACAAATCTTGGCTTGGCATTATAAACACTTTgcagaataaaaatgctaaatcatTCTCTCCCAGTAGCTGGCGCACACAGATCAGTAATGATGACCAGTGAAGTGTCTAAActtttgattaataaaggggagtAAAAGTAGACTGAATTAAgcccataaataaaaaaaaataagtttagatgattaataactgcaaataagcagaggCCTTTATAAGCCCATActctaaataaaaaagtaaataacacaaACGTTcacatttatttccttaaatagTAACTAAGTAACACGTTGAGCTACCTTTTTAAGTGACTTTAGATTGTAACGGATTACTTTTCCCCCAACAGGAAGGAGTTCCTCAGACAGGAAGTGGAGACCAGTACTTTAGGAAgccctgctgctgctgttgctgagTGTCTAGAGCACCTGCAGTCCAGATACTGGATCTCTGCTCACCTGCACTCGACTCAACTCTGATGCAGCACCAGGTTAAGAAAAATGAATAACTCTGCCCCGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000110242

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001894 False 401 processed_transcript 0.46 2 21000784 21002937
TCONS_00001895 False 1047 lncRNA 0.53 4 21000784 21005933
TCONS_00001896 True 543 processed_transcript 0.38 2 21001157 21003309

Neighbor

gene id symbol gene type direction distance location
XLOC_001187 BX323083.3 coding downstream 4758 20990877 ~ 20996026 (-)
XLOC_001186 BX323083.1 coding downstream 14660 20980975 ~ 20986124 (-)
XLOC_001185 klhl2 coding downstream 30518 20932052 ~ 20970266 (-)
XLOC_001184 CT583646.1 coding downstream 70341 20929437 ~ 20930443 (-)
XLOC_001183 msmo1 coding downstream 72012 20916551 ~ 20928772 (-)
XLOC_001189 BX323083.5 coding upstream 4756 21010689 ~ 21015930 (-)
XLOC_001190 RAPGEF2 coding upstream 129079 21135012 ~ 21204114 (-)
XLOC_001191 npy1r coding upstream 236903 21242836 ~ 21297748 (-)
XLOC_001192 tmem144a coding upstream 307232 21313165 ~ 21321482 (-)
XLOC_001193 gria2a coding upstream 327135 21333068 ~ 21409877 (-)
XLOC_001180 NA non-coding downstream 276433 20615209 ~ 20724351 (-)
XLOC_001178 NA non-coding downstream 447652 20459275 ~ 20553132 (-)
XLOC_001199 CR786570.1 non-coding upstream 674431 21680364 ~ 21680478 (-)
XLOC_001204 NA non-coding upstream 993848 21999781 ~ 22001050 (-)
XLOC_001205 CR388092.1 non-coding upstream 1186019 22191952 ~ 22192067 (-)
XLOC_001211 FP245458.1 non-coding upstream 1657790 22663723 ~ 22674613 (-)

Expression


Co-expression Network