XLOC_001186 (BX323083.1)


Basic Information

Item Value
gene id XLOC_001186
gene name BX323083.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 20980975 ~ 20986124 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001888
GAAGGAGTTCCTCAGACAGGAAGTGGAGACCAGTACTTTAGGAAgccctgctgctgctgttgctgagTGTCTAGAGCACCTGCAGTCCAGATACTGGATCTCTGCTCACCTGCACTCGACTCAACTCTGATGCAGCACCAGATTGTGGAGGAATCTTCTAGGAGAAGCTTGAGTTTGATCCAAAATGGCTGGCCATCCTGAATTGGACAGACAAACCTTCAGAAACCAACCCACAGTTGCTGGAACCCCTTCGCTGGACAACAGACAACACAGCAGATACAAAACACATGACAATGATCACAGTTGCTCATTTTCTGAAAGCTTTCTGATACCACATATTCGTTtctatttctaaatgttttagcATCCTGTTCCTCTGCTTCTTTCAGGTGGGATTTCAG
>TCONS_00001889
TGATCGATTCTGATCATCCCGCTGCACAACTCTGAGCAAATCTCCCCTTGGCTGAGTTACATCAGTTTGGAAAGTTGTTTTGGAGTTGTTGATGATGACGCTGCGACGCTCACAGAGGACCAGGACTCTCCCCGGACACCTCAGGGACTTCTTGCTGGAGCGACACCTCAAGAACGCGGCTGTCCTTCCTGCCCTTCGTCCCGCAGCCCCAGTCCCGCCAGTGGGTGAGTGTCTGCAGGAAGAGCCGCTGTCCATCCACGGCCGGAGTGTGGAGGAATACCAGGGCATCTACCGCAGTGTGATGGACTCCACAGTGAAGAAGCCTGCTGGCCGATACACCCTTCAGAAAGGATTGGAGgtaaagcagcggctgtgggagaagCTGGGCCGGCCTGCGCTGCTGGAGACCGAGCAGCCTGATGGACGTGTGCTCATCACGGAGATCAGGTCCGAGTCCAGCGTCCCCCCTCAGATCAAGGTGGACATTAGCAAGGAGCCACTGCCCAAGGAGCCCCGGAGGAAGAGGCCCAGGCACTGAGCCATCCTAGTGCCAGATGAAGGATCATGGGCacGAAGGAGTTCCTCAGACAGGAAGTGGAGACCAGTACTTTAGGAAgccctgctgctgctgttgctgagTGTCTAGAGCACCTGCAGTCCAGATACTGGATCTCTGCTCACCTGCACTCGACTCAACTCTGATGCAGCACCAGGTTAAGAAAAATGAATAACTCTGCCCCGAAGATCAGCAAGTTTCTCTAAGTTGACTAATGTCTTCATTCTGAAGATTGTGGAGGAATCTTCTAGGAGAAGCTTGAGTTTGATCCAAAATGGCTGGCCATCCTGAATTGGACAGACAAACCTTCAGAAACCAACCCACAGTTGCTGGAACCCCTTCGCTGGACAACAGACAACACAGCAGATACAAAACACATGACAATGATCACAGTTGCTCATTTTCTGAAAGCTTTCTGATACCACATATTCGTTtctatttctaaatgttttagcATCCTGTTCCTCTGCTTCTTTCAGGTGGGATTTCAG
>TCONS_00001890
GTAGGAATTAAATGCATAATTAGAAACAAATCTTGGCTTGGCATTATAAACACTTTgcagaataaaaatgctaaatcatTCTCTCCCAGTAGCTGGCGCACACAGATCAGTAATGATGACCAGTGAAGTGTCTAAActtttgattaataaaggggagtAAAAGTAGACTGAATTAAgcccataaataaaaaaaaataagtttagatgattaataactgcaaataagcagaggCCTTTATAAGCCCATActctaaataaaaaagtaaataacacaaACGTTcacatttatttccttaaatagTAACTAAGTAACACGTTGAGCTACCTTTTTAAGTGACTTTAGATTGTAACGGATTACTTTTCCCCCAACAGGAAGGAGTTCCTCAGACAGGAAGTGGAGACCAGTACTTTAGGAAgccctgctgctgctgttgctgagTGTCTAGAGCACCTGCAGTCCAGATACTGGATCTCTGCTCACCTGCACTCGACTCAACTCTGATGCAGCACCAGGTTAAGAAAAATGAATAACTCTGCCCCGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000109806

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001888 False 401 processed_transcript 0.46 2 20980975 20983128
TCONS_00001889 False 1047 lncRNA 0.53 4 20980975 20986124
TCONS_00001890 True 543 processed_transcript 0.38 2 20981348 20983500

Neighbor

gene id symbol gene type direction distance location
XLOC_001185 klhl2 coding downstream 10709 20932052 ~ 20970266 (-)
XLOC_001184 CT583646.1 coding downstream 50532 20929437 ~ 20930443 (-)
XLOC_001183 msmo1 coding downstream 52203 20916551 ~ 20928772 (-)
XLOC_001182 cpe coding downstream 69678 20839482 ~ 20911297 (-)
XLOC_001181 tll1 coding downstream 154952 20733102 ~ 20826023 (-)
XLOC_001187 BX323083.3 coding upstream 4753 20990877 ~ 20996026 (-)
XLOC_001188 BX323083.2 coding upstream 14660 21000784 ~ 21005933 (-)
XLOC_001189 BX323083.5 coding upstream 24565 21010689 ~ 21015930 (-)
XLOC_001190 RAPGEF2 coding upstream 148888 21135012 ~ 21204114 (-)
XLOC_001191 npy1r coding upstream 256712 21242836 ~ 21297748 (-)
XLOC_001180 NA non-coding downstream 256624 20615209 ~ 20724351 (-)
XLOC_001178 NA non-coding downstream 427843 20459275 ~ 20553132 (-)
XLOC_001175 NA non-coding downstream 957236 20003654 ~ 20023739 (-)
XLOC_001173 BX323590.4 non-coding downstream 1192764 19787281 ~ 19788211 (-)
XLOC_001199 CR786570.1 non-coding upstream 694240 21680364 ~ 21680478 (-)
XLOC_001204 NA non-coding upstream 1013657 21999781 ~ 22001050 (-)

Expression


Co-expression Network