RNA id: TCONS_00001889


Basic Information

Item Value
RNA id TCONS_00001889
length 1047
lncRNA type inter_gene
GC content 0.53
exon number 4
gene id XLOC_001186
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 20980975 ~ 20986124 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATCGATTCTGATCATCCCGCTGCACAACTCTGAGCAAATCTCCCCTTGGCTGAGTTACATCAGTTTGGAAAGTTGTTTTGGAGTTGTTGATGATGACGCTGCGACGCTCACAGAGGACCAGGACTCTCCCCGGACACCTCAGGGACTTCTTGCTGGAGCGACACCTCAAGAACGCGGCTGTCCTTCCTGCCCTTCGTCCCGCAGCCCCAGTCCCGCCAGTGGGTGAGTGTCTGCAGGAAGAGCCGCTGTCCATCCACGGCCGGAGTGTGGAGGAATACCAGGGCATCTACCGCAGTGTGATGGACTCCACAGTGAAGAAGCCTGCTGGCCGATACACCCTTCAGAAAGGATTGGAGgtaaagcagcggctgtgggagaagCTGGGCCGGCCTGCGCTGCTGGAGACCGAGCAGCCTGATGGACGTGTGCTCATCACGGAGATCAGGTCCGAGTCCAGCGTCCCCCCTCAGATCAAGGTGGACATTAGCAAGGAGCCACTGCCCAAGGAGCCCCGGAGGAAGAGGCCCAGGCACTGAGCCATCCTAGTGCCAGATGAAGGATCATGGGCacGAAGGAGTTCCTCAGACAGGAAGTGGAGACCAGTACTTTAGGAAgccctgctgctgctgttgctgagTGTCTAGAGCACCTGCAGTCCAGATACTGGATCTCTGCTCACCTGCACTCGACTCAACTCTGATGCAGCACCAGGTTAAGAAAAATGAATAACTCTGCCCCGAAGATCAGCAAGTTTCTCTAAGTTGACTAATGTCTTCATTCTGAAGATTGTGGAGGAATCTTCTAGGAGAAGCTTGAGTTTGATCCAAAATGGCTGGCCATCCTGAATTGGACAGACAAACCTTCAGAAACCAACCCACAGTTGCTGGAACCCCTTCGCTGGACAACAGACAACACAGCAGATACAAAACACATGACAATGATCACAGTTGCTCATTTTCTGAAAGCTTTCTGATACCACATATTCGTTtctatttctaaatgttttagcATCCTGTTCCTCTGCTTCTTTCAGGTGGGATTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003409 lncRNA downstream 256624 20615209 ~ 20724351 (-) False XLOC_001180
TCONS_00003408 lncRNA downstream 256624 20615209 ~ 20724351 (-) True XLOC_001180
TCONS_00003406 lncRNA downstream 427843 20459275 ~ 20553132 (-) False XLOC_001178
TCONS_00001879 lncRNA downstream 428008 20531155 ~ 20552967 (-) True XLOC_001178
TCONS_00003407 lncRNA downstream 449266 20531155 ~ 20531709 (-) False XLOC_001178
TCONS_00001892 lncRNA upstream 4753 20990877 ~ 20996026 (-) False XLOC_001187
TCONS_00001895 lncRNA upstream 14660 21000784 ~ 21005933 (-) False XLOC_001188
TCONS_00001898 lncRNA upstream 24565 21010689 ~ 21015930 (-) False XLOC_001189
TCONS_00001904 lncRNA upstream 174526 21160650 ~ 21161411 (-) True XLOC_001190
TCONS_00001908 lncRNA upstream 334699 21320823 ~ 21321435 (-) True XLOC_001192
TCONS_00001887 mRNA downstream 10709 20932052 ~ 20970266 (-) True XLOC_001185
TCONS_00001885 mRNA downstream 52203 20916551 ~ 20928772 (-) True XLOC_001183
TCONS_00001884 mRNA downstream 69678 20866858 ~ 20911297 (-) True XLOC_001182
TCONS_00001881 mRNA downstream 154952 20733102 ~ 20826023 (-) False XLOC_001181
TCONS_00001882 mRNA downstream 156564 20733344 ~ 20824411 (-) True XLOC_001181
TCONS_00001901 mRNA upstream 148888 21135012 ~ 21163532 (-) False XLOC_001190
TCONS_00001900 mRNA upstream 148888 21135012 ~ 21163532 (-) False XLOC_001190
TCONS_00001902 mRNA upstream 152696 21138820 ~ 21165771 (-) False XLOC_001190
TCONS_00001903 mRNA upstream 152696 21138820 ~ 21204114 (-) False XLOC_001190
TCONS_00001905 mRNA upstream 256712 21242836 ~ 21287724 (-) False XLOC_001191
TCONS_00001886 other downstream 50532 20929437 ~ 20930443 (-) True XLOC_001184
TCONS_00001883 other downstream 102899 20839482 ~ 20878076 (-) False XLOC_001182
TCONS_00001878 other downstream 427846 20481109 ~ 20553129 (-) False XLOC_001178
TCONS_00001874 other downstream 1135595 19843234 ~ 19845380 (-) True XLOC_001174
TCONS_00001851 other downstream 1578160 19368997 ~ 19402815 (-) True XLOC_001163
TCONS_00001891 other upstream 4753 20990877 ~ 20993030 (-) False XLOC_001187
TCONS_00001893 other upstream 5126 20991250 ~ 20993402 (-) True XLOC_001187
TCONS_00001894 other upstream 14660 21000784 ~ 21002937 (-) False XLOC_001188
TCONS_00001896 other upstream 15033 21001157 ~ 21003309 (-) True XLOC_001188
TCONS_00001897 other upstream 24565 21010689 ~ 21012842 (-) False XLOC_001189

Expression Profile

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