RNA id: TCONS_00003406


Basic Information

Item Value
RNA id TCONS_00003406
length 757
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_001178
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 20459275 ~ 20553132 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attggagTCCCAGACTTAAATAGCCTTCGAACGTTCGTTTTAATAAATTATTGGAATTATGGTGACGTCGGTACCACCACTAACGTTATTCAGAAAGTTTGTGGCTGTCAACGCCAAAACAAACAGTTTTGTGTATACTATAATTTTGAGTGCTAGCTGTCTGTTCTGCGTGTTTTGTTTGTGAAATGgagaaatgtgctggaaaaaaacAATCGATTTTAGACGATTAGACCAGCAGCAACGCTAGTCAGTCTGCAGGGGGAGCTGAAGGGATGTTTAAAATTAAAAGCAGGCCTCTGAACTGAACTGAAGACAGACAAAACTGAAGAAATTTACTTCCCGAGATCATCTTTAATGAACAAACACAAAACTTGTCCATGCATCAACTTTTTTATTACTTGTGGAGGAGGACTGGACATGTTGACTGGATTGATTCAGTGGAGGATGAAGGCCTCTGAcgaTGTGCTCTTCATCTATGTGAAGGCTACGCACATCAGAACTCTACACAGACAGATCTCTATGGCTCTGACaaaaaccagctcatttgcattaaaggtacattcaacaaaaacagctacaatgtcctaacagctcaaatttcacacatttaaatggtataataaaaaatatgatgggtattttgagctgaaactttacagacggattctggagacacaaaaggctttaattaaatattgaaaaaggGGTATAATAGGTGGTCTTTCAAACTTATTATTTTTCTCTGAttagaaaatat

Function

GO:

id name namespace
GO:0006892 post-Golgi vesicle-mediated transport biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002947 lncRNA downstream 435536 20003654 ~ 20023739 (-) True XLOC_001175
TCONS_00001872 lncRNA downstream 613886 19838913 ~ 19845389 (-) False XLOC_001174
TCONS_00001869 lncRNA downstream 671064 19787281 ~ 19788211 (-) True XLOC_001173
TCONS_00001868 lncRNA downstream 695354 19760578 ~ 19763921 (-) True XLOC_001172
TCONS_00003405 lncRNA downstream 758317 19689644 ~ 19700958 (-) False XLOC_001171
TCONS_00003409 lncRNA upstream 62077 20615209 ~ 20724351 (-) False XLOC_001180
TCONS_00003408 lncRNA upstream 62077 20615209 ~ 20724351 (-) True XLOC_001180
TCONS_00001889 lncRNA upstream 427843 20980975 ~ 20986124 (-) False XLOC_001186
TCONS_00001892 lncRNA upstream 437745 20990877 ~ 20996026 (-) False XLOC_001187
TCONS_00001895 lncRNA upstream 447652 21000784 ~ 21005933 (-) False XLOC_001188
TCONS_00001876 mRNA downstream 186048 20147222 ~ 20273227 (-) False XLOC_001177
TCONS_00001877 mRNA downstream 188137 20160809 ~ 20271138 (-) True XLOC_001177
TCONS_00001875 mRNA downstream 391120 20063502 ~ 20068155 (-) True XLOC_001176
TCONS_00001870 mRNA downstream 613736 19835803 ~ 19845539 (-) False XLOC_001174
TCONS_00001871 mRNA downstream 613876 19836871 ~ 19845399 (-) False XLOC_001174
TCONS_00001880 mRNA upstream 2935 20556067 ~ 20593778 (-) True XLOC_001179
TCONS_00001881 mRNA upstream 179970 20733102 ~ 20826023 (-) False XLOC_001181
TCONS_00001882 mRNA upstream 180212 20733344 ~ 20824411 (-) True XLOC_001181
TCONS_00001884 mRNA upstream 313726 20866858 ~ 20911297 (-) True XLOC_001182
TCONS_00001885 mRNA upstream 363419 20916551 ~ 20928772 (-) True XLOC_001183
TCONS_00001874 other downstream 613895 19843234 ~ 19845380 (-) True XLOC_001174
TCONS_00001851 other downstream 1056460 19368997 ~ 19402815 (-) True XLOC_001163
TCONS_00001850 other downstream 1093101 19361205 ~ 19366174 (-) False XLOC_001163
TCONS_00001836 other downstream 1647791 18810891 ~ 18811484 (-) False XLOC_001153
TCONS_00001834 other downstream 1717657 18726359 ~ 18741618 (-) True XLOC_001151
TCONS_00001883 other upstream 286350 20839482 ~ 20878076 (-) False XLOC_001182
TCONS_00001886 other upstream 376305 20929437 ~ 20930443 (-) True XLOC_001184
TCONS_00001888 other upstream 427843 20980975 ~ 20983128 (-) False XLOC_001186
TCONS_00001890 other upstream 428216 20981348 ~ 20983500 (-) True XLOC_001186
TCONS_00001891 other upstream 437745 20990877 ~ 20993030 (-) False XLOC_001187

Expression Profile

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