RNA id: TCONS_00003409


Basic Information

Item Value
RNA id TCONS_00003409
length 693
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id XLOC_001180
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 20615209 ~ 20724351 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCATATCAACAAACAACCACCAGATGGAAGCATTCGCTTTAATAAGATTAACACGTGGCTAAAATGTACTTTATGAGACTGATAAGACAGATGGATTTCTCTAAACAAACGTCTTTGTGCCTTAAAAAAATCAGCTCAAGGCCTGGAGCAGACTGCCAACCTCCATTCCGTTAAGAGGACAAAGAAGAGAGGGTGAATTAGAGAACAGAGCGATGGACACACAGACAAAGCTAAATCACCAATGATGCCACCTCCCTCCTCACCCCAATAGAGTTCTTCCAAAAGTTTGTGACAGAAGACATGATTGAGGCTCTGACAAGAAACACGAATGAGTATACAGATTGCAAAAAATGCATCTGTTAACACTAAGGAAATGGAGAAGATGCTTGGCATGTATCCATAGATGGGCCTAATGCAATTGACTCCTTATGTATTGAGAGACAGACATACTGTACACCCCTGTTTCTGATGTGATGTCCCGCAACAGATTATAATCTCTGTTGACTCATTAGACTTTATAAACTACTTGACCGTGCCAGAGACGGAAAAGAAGGACAAACTCTGGAAACTCAGACCGTGGCCAAATTCATTTAGGGGAGAGATGAACTGTCTGAACTGTCTTAGAGACTATCACTGGAAGTAAACACATTCAATCCACCATGAATCTgaccaaatattttttattaaaaaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003406 lncRNA downstream 62077 20459275 ~ 20553132 (-) False XLOC_001178
TCONS_00001879 lncRNA downstream 62242 20531155 ~ 20552967 (-) True XLOC_001178
TCONS_00003407 lncRNA downstream 83500 20531155 ~ 20531709 (-) False XLOC_001178
TCONS_00002947 lncRNA downstream 591470 20003654 ~ 20023739 (-) True XLOC_001175
TCONS_00001872 lncRNA downstream 769820 19838913 ~ 19845389 (-) False XLOC_001174
TCONS_00001889 lncRNA upstream 256624 20980975 ~ 20986124 (-) False XLOC_001186
TCONS_00001892 lncRNA upstream 266526 20990877 ~ 20996026 (-) False XLOC_001187
TCONS_00001895 lncRNA upstream 276433 21000784 ~ 21005933 (-) False XLOC_001188
TCONS_00001898 lncRNA upstream 286338 21010689 ~ 21015930 (-) False XLOC_001189
TCONS_00001904 lncRNA upstream 436299 21160650 ~ 21161411 (-) True XLOC_001190
TCONS_00001880 mRNA downstream 21431 20556067 ~ 20593778 (-) True XLOC_001179
TCONS_00001876 mRNA downstream 341982 20147222 ~ 20273227 (-) False XLOC_001177
TCONS_00001877 mRNA downstream 344071 20160809 ~ 20271138 (-) True XLOC_001177
TCONS_00001875 mRNA downstream 547054 20063502 ~ 20068155 (-) True XLOC_001176
TCONS_00001870 mRNA downstream 769670 19835803 ~ 19845539 (-) False XLOC_001174
TCONS_00001881 mRNA upstream 8751 20733102 ~ 20826023 (-) False XLOC_001181
TCONS_00001882 mRNA upstream 8993 20733344 ~ 20824411 (-) True XLOC_001181
TCONS_00001884 mRNA upstream 142507 20866858 ~ 20911297 (-) True XLOC_001182
TCONS_00001885 mRNA upstream 192200 20916551 ~ 20928772 (-) True XLOC_001183
TCONS_00001887 mRNA upstream 207701 20932052 ~ 20970266 (-) True XLOC_001185
TCONS_00001878 other downstream 62080 20481109 ~ 20553129 (-) False XLOC_001178
TCONS_00001874 other downstream 769829 19843234 ~ 19845380 (-) True XLOC_001174
TCONS_00001851 other downstream 1212394 19368997 ~ 19402815 (-) True XLOC_001163
TCONS_00001850 other downstream 1249035 19361205 ~ 19366174 (-) False XLOC_001163
TCONS_00001836 other downstream 1803725 18810891 ~ 18811484 (-) False XLOC_001153
TCONS_00001883 other upstream 115131 20839482 ~ 20878076 (-) False XLOC_001182
TCONS_00001886 other upstream 205086 20929437 ~ 20930443 (-) True XLOC_001184
TCONS_00001888 other upstream 256624 20980975 ~ 20983128 (-) False XLOC_001186
TCONS_00001890 other upstream 256997 20981348 ~ 20983500 (-) True XLOC_001186
TCONS_00001891 other upstream 266526 20990877 ~ 20993030 (-) False XLOC_001187

Expression Profile

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