RNA id: TCONS_00001891


Basic Information

Item Value
RNA id TCONS_00001891
length 401
RNA type processed_transcript
GC content 0.46
exon number 2
gene id XLOC_001187
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 20990877 ~ 20996026 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGGAGTTCCTCAGACAGGAAGTGGAGACCAGTACTTTAGGAAgccctgctgctgctgttgctgagTGTCTAGAGCACCTGCAGTCCAGATACTGGATCTCTGCTCACCTGCACTCGACTCAACTCTGATGCAGCACCAGATTGTGGAGGAATCTTCTAGGAGAAGCTTGAGTTTGATCCAAAATGGCTGGCCATCCTGAATTGGACAGACAAACCTTCAGAAACCAACCCACAGTTGCTGGAACCCCTTCGCTGGACAACAGACAACACAGCAGATACAAAACACATGACAATGATCACAGTTGCTCATTTTCTGAAAGCTTTCTGATACCACATATTCGTTtctatttctaaatgttttagcATCCTGTTCCTCTGCTTCTTTCAGGTGGGATTTCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000184750

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001889 lncRNA downstream 4753 20980975 ~ 20986124 (-) False XLOC_001186
TCONS_00003409 lncRNA downstream 266526 20615209 ~ 20724351 (-) False XLOC_001180
TCONS_00003408 lncRNA downstream 266526 20615209 ~ 20724351 (-) True XLOC_001180
TCONS_00003406 lncRNA downstream 437745 20459275 ~ 20553132 (-) False XLOC_001178
TCONS_00001895 lncRNA upstream 7754 21000784 ~ 21005933 (-) False XLOC_001188
TCONS_00001898 lncRNA upstream 17659 21010689 ~ 21015930 (-) False XLOC_001189
TCONS_00001904 lncRNA upstream 167620 21160650 ~ 21161411 (-) True XLOC_001190
TCONS_00001908 lncRNA upstream 327793 21320823 ~ 21321435 (-) True XLOC_001192
TCONS_00001920 lncRNA upstream 563514 21556544 ~ 21558413 (-) True XLOC_001196
TCONS_00001887 mRNA downstream 20611 20932052 ~ 20970266 (-) True XLOC_001185
TCONS_00001885 mRNA downstream 62105 20916551 ~ 20928772 (-) True XLOC_001183
TCONS_00001884 mRNA downstream 79580 20866858 ~ 20911297 (-) True XLOC_001182
TCONS_00001881 mRNA downstream 164854 20733102 ~ 20826023 (-) False XLOC_001181
TCONS_00001901 mRNA upstream 141982 21135012 ~ 21163532 (-) False XLOC_001190
TCONS_00001900 mRNA upstream 141982 21135012 ~ 21163532 (-) False XLOC_001190
TCONS_00001902 mRNA upstream 145790 21138820 ~ 21165771 (-) False XLOC_001190
TCONS_00001903 mRNA upstream 145790 21138820 ~ 21204114 (-) False XLOC_001190
TCONS_00001905 mRNA upstream 249806 21242836 ~ 21287724 (-) False XLOC_001191
TCONS_00001890 other downstream 7377 20981348 ~ 20983500 (-) True XLOC_001186
TCONS_00001888 other downstream 7749 20980975 ~ 20983128 (-) False XLOC_001186
TCONS_00001886 other downstream 60434 20929437 ~ 20930443 (-) True XLOC_001184
TCONS_00001883 other downstream 112801 20839482 ~ 20878076 (-) False XLOC_001182
TCONS_00001878 other downstream 437748 20481109 ~ 20553129 (-) False XLOC_001178
TCONS_00001894 other upstream 7754 21000784 ~ 21002937 (-) False XLOC_001188
TCONS_00001896 other upstream 8127 21001157 ~ 21003309 (-) True XLOC_001188
TCONS_00001897 other upstream 17659 21010689 ~ 21012842 (-) False XLOC_001189
TCONS_00001899 other upstream 18032 21011062 ~ 21013214 (-) True XLOC_001189
TCONS_00001916 other upstream 533642 21526672 ~ 21527371 (-) False XLOC_001195