XLOC_001193 (gria2a)


Basic Information

Item Value
gene id XLOC_001193
gene name gria2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 21333068 ~ 21409877 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001909
GGGACGGAGCCGCAAAGGAGGAGGGAAAGACTCCCGCATCATCGCGCCCGCTCTTTCCCTCACCAGCACCGAGAGCCGTTGCGTTTCAGCTGTGGTCAGTTTTAACATGTGTCCACCCTGTATGATGCCCGCTGTTTTGTGAACAGTGCGCGTTTGGTGGATGTGGTCGCGTGGATAAGCAGAAGACGATGATTTTGTCGGGTCTCCTTTTACCCGCGTTATGGGGACTGGCGCTCGGCGGATCTCCAAGCGTCCAAATCGGTGGCCTGTTCCCTAGAGGAGCAGATCAAGAGTACAGCGCGTTTCGGATCGGAATGGTCCAGTTCGGCACGGCAGAATTCCGCCTCACTCCGCACATTGATAACCTGGAGGTGGCAAACAGCTTCGCCATAACCAATTGCTtttgctcCCAGTTTTCCAGAGGAGTGTACGCTATCTTTGGCTTCTACGATAAGAAGTCGGTGAACACAATCACGTCATTCTGCGAGACGCTGCACGTGTCCTTCATCACACCCAGTTTTCCAGCAGATGGCCTCAACCAGTTTGTCCTGCAGATGAGGCCTGATATTAAAGGGCCCCTCATCAGCCTGGTGGAGTATTACAAGTGGGAGAAGTTTGCCTATCTGTATGACAGCGACAGAGGTCTGTCGACCCTGCAGGCGGTGCTGGACACAGCAGCAGAGAGGAAATGGCAGGTAACAGCCATAAACGTTGGAAACCTGAAGGATGAGTGGAAAGACGAGGCATATCGCTCACTCTTTCAGGACCTGGAGAACAAGAACGAGAGGAGAGTCATCCTCGACTGTGAACAGGACAAGGTCAAGGACATTATGGAGCAGGTGATTACCATCGGTCGACATGTGAAAGGATATCATTACATCATTGCAAATTttGGCTTTGTGGATGGAGATTTATCCAAGATTCAGTATGGAGGAGCGAATGTGTCTGGATTTCAGATTGTGGATTTTGATGACCCGCTTGTTGCTAAATTTGACCAGCGCTGGGAGGCTCTGGAGGAAAAGGAGTATCCTGGAGCGGACAGCAGAATTAGGTACACCTCCGCTCTCACATATGATGCTGTGCAAGTGATGACAGAGGCGTTTCGCTTTCTGCATAAACAAAGGATTGACATCAGTCGCCGTGGCAACAACGGAGACTGCCTGGCCAATCCTGCGGTGCCGTGGGCTCAGGGGGTGGAGATTGAACGTGCTCTTAAACAGGTGCGTGTGGATGGATTGACTGGAAATATTCAGTTTGATCAGTATGGCAGAAGAGTGAATTACACAGTCAATGTCATGGAGCTGAAAAACAGCGGCCCTGTGAAGATTGGCTACTGGAATGAGATGGACAAAATGGCAGTGACAAAGTCTGACCTTTTCCCCAATGACACCATGGGAATGGAAAATAAAACGGTTATTGTGACGACAATCCTGGAGGCACCGTATGTGATGCTGAAAAAGAATGCAGAGTTATTCACTGATAATGAACGTTATGAGGGATACTGTGTGGATTTGGCTGCTGAGATTGCAAAGCATTGCGGATTTAAGTATCAGCTGAGGATTGTCGCTGATGGAAAGTATGGCGCTCGAGATGCTGAGACCAAGATCTGGAATGGCATGGTTGGAGAACTGGTGTACGGGAAAGCAGACATAGCAGTCGCTCCTCTCACCATCACTCTTGTCAGAGAGGAAGTGATAGACTTCTCGAAACCATTCATGAGTCTGGGCATATCCATTATGATCAAGAAACCACAGAAATCCAAGCCGGGCGTCTTCTCTTTCCTGGATCCACTGGCTTATGAGATCTGGATGTGCATTGTGTTTGCCTACATCGGAGTTAGCGTTGTGCTCTTCCTCGTTAGCCGCTTCAGCCCTTACGAGTGGCACACTGAGGAGTTTGAGGATGGGCAGCTGGGCCCAAGCGAATCTACCAACGAATTTGGCATCTTTAATAGTCTGTGGTTTTCTCTGGGCGCTTTTATGCAGCAGGGATGCGATATTTCACCAAGGTCTTTGTCTGGCCGTATAGTTGGTGGTGTGTGGTGGTTTTTCACCCTCATCATCATTTCTTCCTACACGGCTAACCTGGCTGCCTTCCTCACTGTGGAGAGAATGGTGTCCCCTATCGAAAGTGCTGAAGACCTGGCCAAACAGACGGAGATTGCCTATGGGACACTGGATGCTGGTTCCACCAAAGAGTTCTTTAGGAGATCTAAGATTGCTCTCTTTGACAAGATGTGGCAGTACATGAAGAGCGCAGAGCCTTCGGTGTTTGTTAAAAACACAGTGGAAGGCGTCTTGCGTGTCCGGAAATCCAAAGGCAAATACGCTTATCTTCTGGAGTCCACCATGAATGAATACATCGAGCAGCGCAAGCCCTGCGACACCATGAAGGTCGGAGGGAACCTTGACTCTAAAGGCTACGGCATCGCCACACCCAAGGGATCTGCTTTAAGAAACGCGGTAAACCTTGCAGTGCTAAAACTGAACGAGCAGGGGCTTCTGGataaattgaaaaacaaatgGTGGTACGACAAAGGAGAGTGCGGCAGCGGAGGCGGGGAGTCAAAGGAGAAGACTAGCGCCCTCAGCCTGAGTAACGTTGCGGGTGTCTTCTACATCCTGGTTGGCGGCCTCGGGTTGGCCATGCTGGTCGCTCTGGTGGAGTTCTGCTACAAGTCGCGCGCGGAGGCCAAACGCATGAAGGTTGCCAAGACTCAGGCTCTAAATCCCTCCTCTTCCTCGCAGAATTCTCAGAATTTTGCTACTTATAAGGAAGGGTACAACGTTTATGGGCTGGAGAGTGTTAAGATCTAGTGGGATGACGTTCACAGATGCTATGCGCAGTAAGGCCAGGTTGTCTATAACGGGCAGTACAGGGGAGAACGGGCGAGTGCTGACTCCAGACTTCTCTAAAGCCGTCCATGCTGTGCCGTACCTGAGACCTGGCATGGCAATGCCTCTGAGTGTGAGCGAGCTGTCCTGAGTgccttacacacacatacacacaaacactggtGCAAGCATGCTGTACCCCCACTTTCATACGTGTACATAttcttacacacacagacacactataaataaatatatatatatatatatatatatacataataatagtTAACTATTCCATATTCAATGAATCACAACATCTATACACAGGATGTCAGATCCATTTAAACACACTTTATCACGTTTACTGTTCAGTGCAATCATATTTTGGCCAGCGTGTCACGTGTACATTTGCAAAAACAGACGTAAAAAAGGTATACAGGCACATGGCCGCGTGTGCATATGCAGACAACTTCAACTTTGTGTAGCTACACATCTAT
>TCONS_00001910
TCCCCTATCGAAAGTGCTGAAGACCTGGCCAAACAGACGGAGATTGCCTATGGGACACTGGATGCTGGTTCCACCAAAGAGTTCTTTAGGAGATCTAAGATTGCTCTCTTTGACAAGATGTGGCAGTACATGAAGAGCGCAGAGCCTTCGGTGTTTGTTAAAAACACAGTGGAAGGCGTCTTGCGTGTCCGGAAATCCAAAGGCAAATACGCTTATCTTCTGGAGTCCACCATGAATGAATACATCGAGCAGCGCAAGCCCTGCGACACCATGAAGGTCGGAGGGAACCTTGACTCTAAAGGCTACGGCATCGCCACACCCAAGGGATCTGCTTTAAGAACGCCAGTAAACCTTGCAGTATTGAAACTCAGTGAGCAAGGCATCTTAGACAAGCTGAAAAACAAATGGTGGTACGATAAGGGAGAATGTGGAGCCAAGGACTCTGGAAGTAAGGAGAAGACTAGCGCCCTCAGCCTGAGTAACGTTGCGGGTGTCTTCTACATCCTGGTTGGCGGCCTCGGGTTGGCCATGCTGGTCGCTCTGGTGGAGTTCTGCTACAAGTCGCGCGCGGAGGCCAAACGCATGAAGATGACGTTCACAGATGCTATGCGCAGTAAGGCCAGGTTGTCTATAACGGGCAGTACAGGGGAGAACGGGCGAGTGCTGACTCCAGACTTCTCTAAAGCCGTCCATGCTGTGCCGTACCTGAGACCTGGCATGGCAATGCCTCTGAGTGTGAGCGAGCTGTCCTGAGTgccttacacacacatacacacaaacactggtGCAAGCATGCTGTACCCCCACTTTCATACGTGTACATAttcttacacacacagacacactataaataaatatatatatatatatatatatatacataataatagtTAACTATTCCATATTCAATGAATCACAACATCTATACACAGGATGTCAGATCCATTTAAACACACTTTATCACGTTTACTGTTCAGTGCAATCATATTTTGGCCAGCGTGTCACGTGTACATTTGCAAAAACAGACGTAAAAAAGGTATACAG

Function

symbol description
gria2a Predicted to enable AMPA glutamate receptor activity. Acts upstream of or within several processes, including embryonic cranial skeleton morphogenesis; mechanosensory lateral line system development; and neural crest cell development. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in dendritic spine and plasma membrane. Is expressed in nervous system. Orthologous to human GRIA2 (glutamate ionotropic receptor AMPA type subunit 2).

GO:

id name namespace
GO:0048899 anterior lateral line development biological_process
GO:0014032 neural crest cell development biological_process
GO:0048915 posterior lateral line system development biological_process
GO:0007399 nervous system development biological_process
GO:0006811 ion transport biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0043197 dendritic spine cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0032281 AMPA glutamate receptor complex cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function
GO:0004971 AMPA glutamate receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020125-3 Predicted to enable AMPA glutamate receptor activity. Acts upstream of or within several processes, including embryonic cranial skeleton morphogenesis; mechanosensory lateral line system development; and neural crest cell development. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in dendritic spine and plasma membrane. Is expressed in nervous system. Orthologous to human GRIA2 (glutamate ionotropic receptor AMPA type subunit 2).

Ensembl:

ensembl_id ENSDARG00000070173

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001909 False 3334 mRNA 0.49 16 21333068 21409877
TCONS_00001910 True 1044 mRNA 0.47 5 21333126 21344478

Neighbor

gene id symbol gene type direction distance location
XLOC_001192 tmem144a coding downstream 11586 21313165 ~ 21321482 (-)
XLOC_001191 npy1r coding downstream 35320 21242836 ~ 21297748 (-)
XLOC_001190 RAPGEF2 coding downstream 128954 21135012 ~ 21204114 (-)
XLOC_001189 BX323083.5 coding downstream 317138 21010689 ~ 21015930 (-)
XLOC_001188 BX323083.2 coding downstream 327135 21000784 ~ 21005933 (-)
XLOC_001194 glrba coding upstream 13133 21423010 ~ 21483832 (-)
XLOC_001195 wdr19 coding upstream 85973 21495850 ~ 21538673 (-)
XLOC_001196 ncapd3 coding upstream 130576 21540453 ~ 21563040 (-)
XLOC_001197 adamtsl7 coding upstream 166797 21576674 ~ 21599219 (-)
XLOC_001198 zcchc7 coding upstream 200594 21610471 ~ 21714025 (-)
XLOC_001187 BX323083.3 non-coding downstream 337042 20990877 ~ 20996026 (-)
XLOC_001186 BX323083.1 non-coding downstream 346944 20980975 ~ 20986124 (-)
XLOC_001184 CT583646.1 non-coding downstream 402625 20929437 ~ 20930443 (-)
XLOC_001199 CR786570.1 non-coding upstream 270487 21680364 ~ 21680478 (-)
XLOC_001204 NA non-coding upstream 589904 21999781 ~ 22001050 (-)
XLOC_001205 CR388092.1 non-coding upstream 782075 22191952 ~ 22192067 (-)
XLOC_001211 FP245458.1 non-coding upstream 1253846 22663723 ~ 22674613 (-)
XLOC_001224 NA non-coding upstream 2007038 23416915 ~ 23436608 (-)

Expression


Co-expression Network