XLOC_001197 (adamtsl7)


Basic Information

Item Value
gene id XLOC_001197
gene name adamtsl7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 21576674 ~ 21599219 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001921
acacaaacacacatctctATTCAGAGACAGCTCTACTGCAGTGTttctcactgacacacacacacacacatatcatattAACTGCTTTATTCTGCTCATGGCTTGTGATAGCGGACACCGGTGGAGACTCATCCTGCATTTCCTCCAGATGACCCTCCTGCTCTTCTTCCTCTGCCCACCCACAGAGCCTGCTCCCTGGGACAGCGACTCCAGCAGCGGCCCTGGAGAGGGCTGTGAGGGTTTCCAGGTggatgtgtgtggtgtgtgtgctgGAGACGGGAGCTCGTGTGAACTGTTCAATGGGACAATCTTTCTCTCTGTGCTCTCGGTTAGATACCACAAGATCCTGGATATCCCCTCTGGAGCTCTGCGAATAAAAATACAGGAAACACACAAGACCAGGAACTATTTGGCTCTCAGCATGGCAACTGGTGAATCGGTGATAAATGGTGACTGGGTGATCGACAGGCCAGGACAGTTTTACGCCGCAGGCACTCAGTTCACATACAAGCGGCCCAATGAGATACGCAGCAGAGCAGGAGAATCCATCACTGCACCTGGACCCACCAATCAGGAGCTGAATCTCTTTgtgaTTTACCAACAGCCTGATGCAGCAGTGTATTATGAATATATTCTACCCAAACACACTAACACTCATTCAGATGCATATTCTTACTCTAGCGTACTTCCTCTAGTCGAGAGTCATGGAATATTTCCTGATTCTGAAAACAGTGTTGGTGAAAACTCATTGAGCAGCTTTCACCCTAACCAAGTCCCATCAGACTCAGTAACCCTTGAACCAGTGCCTCTGTACAGCTGGATGGCAATGGCCACAACACCCTGCAGTACCACCTGTGGAACAGGCAATCGTCAGGTTCTGTTTGGCTGTGTGGAAAGGGCCACTCAAACCACTGTACTAGAGGATCTGTGCAGCTCCATCACTCATCCTGGACCTCAGGTTGAAGAGTGTCAGTCACAGCCTTGTCCTGCtttttGGGATGTTGGTGAATGGTCTGAGTGCAGTAAGACTTGTGGTCCAGGTTTCCAGTATCGTCAGGTGATTTGCCGGCAAACACAGGGACAGCATGGCAGTAGTACAGTGGTGGTGGCGAACAGCATGTGTGACGACACAGAGATGCCAGATACCACCAGCGTCTGCCAGCTCAAGATCTGCAGTGAGTGGCAGATCCGCTCCGAGTGGACTGAGTGCTCTGTGCCGTGTGGTGTCGGTCAGCGCAGTAGAGAAGTGGTGTGTGTGGATAACCTGGGTGATATTGTTTCTGACGAGGAATGCAACATGGCCCTTCGCCCGCAGGATCTGCAGAACTGTGACAAAGGAGTGTGTGCCAGCAGCTGGTTCTACTCTCTCTGGAGTGAAAGGTGTTCTGCAGACTGTGCTGAAGGCAGTCGCAGCCGGTCGGTGGTGTGTTTGATGAGCCAAAGTAACTCTCTGCCGCTGGACGACTGTGATGATGAGGACAAACCCGATGAGCTCATGCAGTGTGACCTGGGACCCTGCACACAGAGACTGGAGTGGTACACAGGGCCTTGGGGACAGTGCTCATCTGAATGTGGCAATGGTACCCAGAGTCGTGGTGTGGTCTGTGTTGTCCAAAACGGTGGTCATTTAGAAGTGACCTCAGATGACCTCTGCTCTCATCTGCCTCGTCCTCCAACTGCACAGAGCTGCTATTTGAAGAGCTGTGCGGCGCAGTGGTTCATGACTGAGTGGAGCTCGTGTTCCCGCTCTTGTGAAGGAGGCTTTCGAGTGAGGGAGGTACGGTGTTTACGAGATGACCTGACATCAAGTCATGACTGTGATCCTGCCCTTGAACCTGCAAAACAGGAGAAATGTAACACACACATCTGCACACTACAGATCGACGAGTCCTGCAGAGACATGTACTATAACTGTGTGGTGGTGGTCCAGGCACGTTTGTGTGTTTACTCATACTATCGCACCACATGCTGCGCGTCCTGCTCTCGGGTCATTCAGAGAGACTCGCTGCATACAATCAGGTGATCTGCCTGCTTTTCAGGACGTGGCATCATTTTCAGCTGGATCTGACCCGGAGAGGACATCACTGCTCATCTCCTCTCTGCCGTATTCTTCAAGACAAGTATACATTCAAGACGTATACATTCACTGCCCCTCTTTTTACAGCTGCAATTTAAGAATGCTCCATGAGCAACTGAATATTTATTGCAAATAAAACCAACTGAGCC

Function

symbol description
adamtsl7 Orthologous to human THSD4 (thrombospondin type 1 domain containing 4).

GO:

id name namespace
GO:0030198 extracellular matrix organization biological_process
GO:0031012 extracellular matrix cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070816-2 Orthologous to human THSD4 (thrombospondin type 1 domain containing 4).

Ensembl:

ensembl_id ENSDARG00000055439

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001921 True 2226 mRNA 0.51 12 21576674 21599219

Neighbor

gene id symbol gene type direction distance location
XLOC_001196 ncapd3 coding downstream 13634 21540453 ~ 21563040 (-)
XLOC_001195 wdr19 coding downstream 38001 21495850 ~ 21538673 (-)
XLOC_001194 glrba coding downstream 92842 21423010 ~ 21483832 (-)
XLOC_001193 gria2a coding downstream 166797 21333068 ~ 21409877 (-)
XLOC_001192 tmem144a coding downstream 255192 21313165 ~ 21321482 (-)
XLOC_001198 zcchc7 coding upstream 11252 21610471 ~ 21714025 (-)
XLOC_001199 CR786570.1 coding upstream 81145 21680364 ~ 21680478 (-)
XLOC_001200 si:ch211-134c9.2 coding upstream 122432 21721651 ~ 21723360 (-)
XLOC_001201 melk coding upstream 262168 21861387 ~ 21881818 (-)
XLOC_001202 frmpd1a coding upstream 294070 21893289 ~ 21901589 (-)
XLOC_001189 BX323083.5 non-coding downstream 560744 21010689 ~ 21015930 (-)
XLOC_001188 BX323083.2 non-coding downstream 570741 21000784 ~ 21005933 (-)
XLOC_001187 BX323083.3 non-coding downstream 580648 20990877 ~ 20996026 (-)
XLOC_001186 BX323083.1 non-coding downstream 590550 20980975 ~ 20986124 (-)
XLOC_001184 CT583646.1 non-coding downstream 646231 20929437 ~ 20930443 (-)
XLOC_001204 NA non-coding upstream 400562 21999781 ~ 22001050 (-)
XLOC_001205 CR388092.1 non-coding upstream 592733 22191952 ~ 22192067 (-)
XLOC_001211 FP245458.1 non-coding upstream 1064504 22663723 ~ 22674613 (-)
XLOC_001224 NA non-coding upstream 1817696 23416915 ~ 23436608 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_07997208_08015430 NA coding CI01000300 null 7996971 ~ 8015430 (-)
bowfin (Amia calva) AMCG00007886 NA coding CM030123.1 CM030123.1 36038446 ~ 36060653 (-)