Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001909 |
| length | 3334 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 16 |
| gene id | XLOC_001193 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 21333068 ~ 21409877 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048899 | anterior lateral line development | biological_process |
| GO:0014032 | neural crest cell development | biological_process |
| GO:0048915 | posterior lateral line system development | biological_process |
| GO:0007399 | nervous system development | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0048701 | embryonic cranial skeleton morphogenesis | biological_process |
| GO:0045202 | synapse | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0045211 | postsynaptic membrane | cellular_component |
| GO:0043197 | dendritic spine | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0032281 | AMPA glutamate receptor complex | cellular_component |
| GO:0038023 | signaling receptor activity | molecular_function |
| GO:0015276 | ligand-gated ion channel activity | molecular_function |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0004970 | ionotropic glutamate receptor activity | molecular_function |
| GO:0004971 | AMPA glutamate receptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-020125-3 | Predicted to enable AMPA glutamate receptor activity. Acts upstream of or within several processes, including embryonic cranial skeleton morphogenesis; mechanosensory lateral line system development; and neural crest cell development. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in dendritic spine and plasma membrane. Is expressed in nervous system. Orthologous to human GRIA2 (glutamate ionotropic receptor AMPA type subunit 2). |
| ensembl_id | ENSDART00000102782 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00001908 | lncRNA | downstream | 11633 | 21320823 ~ 21321435 (-) | True | XLOC_001192 |
| TCONS_00001904 | lncRNA | downstream | 171657 | 21160650 ~ 21161411 (-) | True | XLOC_001190 |
| TCONS_00001898 | lncRNA | downstream | 317138 | 21010689 ~ 21015930 (-) | False | XLOC_001189 |
| TCONS_00001895 | lncRNA | downstream | 327135 | 21000784 ~ 21005933 (-) | False | XLOC_001188 |
| TCONS_00001892 | lncRNA | downstream | 337042 | 20990877 ~ 20996026 (-) | False | XLOC_001187 |
| TCONS_00001920 | lncRNA | upstream | 146667 | 21556544 ~ 21558413 (-) | True | XLOC_001196 |
| TCONS_00003410 | lncRNA | upstream | 311957 | 21721834 ~ 21723360 (-) | True | XLOC_001200 |
| TCONS_00001926 | lncRNA | upstream | 470378 | 21880255 ~ 21881768 (-) | True | XLOC_001201 |
| TCONS_00003411 | lncRNA | upstream | 589904 | 21999781 ~ 22001050 (-) | True | XLOC_001204 |
| TCONS_00001938 | lncRNA | upstream | 1241702 | 22651579 ~ 22652026 (-) | True | XLOC_001210 |
| TCONS_00001907 | mRNA | downstream | 11586 | 21313165 ~ 21321482 (-) | False | XLOC_001192 |
| TCONS_00001906 | mRNA | downstream | 35320 | 21242836 ~ 21297748 (-) | True | XLOC_001191 |
| TCONS_00001905 | mRNA | downstream | 45344 | 21242836 ~ 21287724 (-) | False | XLOC_001191 |
| TCONS_00001903 | mRNA | downstream | 128954 | 21138820 ~ 21204114 (-) | False | XLOC_001190 |
| TCONS_00001902 | mRNA | downstream | 167297 | 21138820 ~ 21165771 (-) | False | XLOC_001190 |
| TCONS_00001911 | mRNA | upstream | 13133 | 21423010 ~ 21483832 (-) | True | XLOC_001194 |
| TCONS_00001912 | mRNA | upstream | 85973 | 21495850 ~ 21538673 (-) | False | XLOC_001195 |
| TCONS_00001913 | mRNA | upstream | 90323 | 21500200 ~ 21538329 (-) | False | XLOC_001195 |
| TCONS_00001914 | mRNA | upstream | 106161 | 21516038 ~ 21529641 (-) | False | XLOC_001195 |
| TCONS_00001915 | mRNA | upstream | 106604 | 21516481 ~ 21538329 (-) | False | XLOC_001195 |
| TCONS_00001899 | other | downstream | 319854 | 21011062 ~ 21013214 (-) | True | XLOC_001189 |
| TCONS_00001897 | other | downstream | 320226 | 21010689 ~ 21012842 (-) | False | XLOC_001189 |
| TCONS_00001896 | other | downstream | 329759 | 21001157 ~ 21003309 (-) | True | XLOC_001188 |
| TCONS_00001894 | other | downstream | 330131 | 21000784 ~ 21002937 (-) | False | XLOC_001188 |
| TCONS_00001893 | other | downstream | 339666 | 20991250 ~ 20993402 (-) | True | XLOC_001187 |
| TCONS_00001916 | other | upstream | 116795 | 21526672 ~ 21527371 (-) | False | XLOC_001195 |
| TCONS_00001923 | other | upstream | 270487 | 21680364 ~ 21680478 (-) | True | XLOC_001199 |
| TCONS_00001929 | other | upstream | 782075 | 22191952 ~ 22192067 (-) | True | XLOC_001205 |
| TCONS_00001939 | other | upstream | 1253846 | 22663723 ~ 22674613 (-) | True | XLOC_001211 |
| TCONS_00001973 | other | upstream | 1913125 | 23323002 ~ 23330066 (-) | False | XLOC_001223 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000300_07859787_07907302.mRNA | True | 2625 | mRNA | 0.50 | 15 | CI01000300 | 7859787 ~ 7907302 (-) |
