RNA id: TCONS_00001906


Basic Information

Item Value
RNA id TCONS_00001906
length 1385
RNA type mRNA
GC content 0.51
exon number 3
gene id XLOC_001191
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 21242836 ~ 21297748 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACGCTTGTGCAGACGCGCAGTGGAGCCAGCTGTCAGTTCAGAGTCagcgctgcacacacacacacaaacacacacggccACTCACTTTAGACTGATTGAGACGCGCGTGTGCCTTCAGCTCTGACCGACAGCAGTGTGTTACCAGAATTACAAAGACATGGAAAAATCATTACCTAAGAGGAAGGAGTCTATGATCACCTGATATAAACTAACCCCCTGTGACTACAGAGGAGGCGGAACAATGCCAGACTCCGCCTTCTCTCCGCCAGTTCCACCAATCGCTGCTCTGAACTGTTCCCTGGACTTATCGAATTGTTCAATCACGAACCTCTCTGCGATTGCATATGGCGACGAGTGCTATGGCAGCCACTCTTTGTTTGTTATCATGGCTGTTGCCTACAGTGCTGTTGTACTGCTGGGTGTCATTGGAAACCTGGCTCTCATCCTTGTGATCGCACGCCAGCGGGAGCTTCACAATGTCACAAATGTCTTAATCGCAAACCTCTCGGTTTCAGACTTGCTGATGGCAGTGGTGTGTCTGCCCTTCACCTTCATCTACACCTTCATGGACCATTGGGTTTTCGGTGCGGTCATGTGTAAACTCAACAGCCTGGTTCagtgctgctccgtctcagtgtcgATATTCTCCTTGGTTCTTATCGCCATTGAGAGACACCAACTCATCCTGCACCCTCGTGGATGGAGGCCCAGCCTGAACCACGCTTGCCTGGGCATCAGCTTGACCTGGGCCCTGGCTGTCCTCACCGCTACACCTTTTCTACTGTTCTCCCGGGTGACAGACGCCCCGCTCAAGCAGCTGCCTTCAGTGTTTCAGGAGCAGTATCGGGGAAAAGTGGTGTGTGTGGAGGAGTGGCCCTCCAGAGAAATCAAACTCACCTACACCACCGGCATGCTGGTGCTGCAATACATCACGCCTCTCACATTCATCTTCATCTGTTACCTGAAGATATACACTCGTCTGCAGCGGCGAAACAACATGATGGAAAGAATCCGTGAAAACAAATACCGTAGCAGTGAGTCTAAACGGATAAACATCATGCTCTTTTCCATTGTGGTGGCATTTGCAGTTTGCTGGCTCCCGCTGAACGTGTTTAATGCAGTCATCGACTGGAATCATGAAGTGGCGATGAACTGTACCCACAACCTTCTGTTCTCTCTGTGTCACCTGACCGCGATGTGCTCGGTCTGCATTAACCCCATCTTCTACGGCTTTCTGAACCGCAACTTCCAGCGTGACCTGAGGGCCTTCCGACTCTGCAAGATTGTGTCGACGCGTGAAAACGAATATGACATGGTCGCCATGTCCACAGTTAACACAGACGTGTCCAAGATGTCTTTAAAAATGAGTAGCCTAGATCTCTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004983 neuropeptide Y receptor activity molecular_function

KEGG:

id description
ko04024 cAMP signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04923 Regulation of lipolysis in adipocytes
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-080221-1 Predicted to enable neuropeptide Y receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human NPY1R (neuropeptide Y receptor Y1).

Ensembl:

ensembl_id ENSDART00000142109

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001904 lncRNA downstream 81425 21160650 ~ 21161411 (-) True XLOC_001190
TCONS_00001898 lncRNA downstream 226906 21010689 ~ 21015930 (-) False XLOC_001189
TCONS_00001895 lncRNA downstream 236903 21000784 ~ 21005933 (-) False XLOC_001188
TCONS_00001892 lncRNA downstream 246810 20990877 ~ 20996026 (-) False XLOC_001187
TCONS_00001889 lncRNA downstream 256712 20980975 ~ 20986124 (-) False XLOC_001186
TCONS_00001908 lncRNA upstream 23075 21320823 ~ 21321435 (-) True XLOC_001192
TCONS_00001920 lncRNA upstream 258796 21556544 ~ 21558413 (-) True XLOC_001196
TCONS_00003410 lncRNA upstream 424086 21721834 ~ 21723360 (-) True XLOC_001200
TCONS_00001926 lncRNA upstream 582507 21880255 ~ 21881768 (-) True XLOC_001201
TCONS_00003411 lncRNA upstream 702033 21999781 ~ 22001050 (-) True XLOC_001204
TCONS_00001903 mRNA downstream 38722 21138820 ~ 21204114 (-) False XLOC_001190
TCONS_00001902 mRNA downstream 77065 21138820 ~ 21165771 (-) False XLOC_001190
TCONS_00001901 mRNA downstream 79304 21135012 ~ 21163532 (-) False XLOC_001190
TCONS_00001900 mRNA downstream 79304 21135012 ~ 21163532 (-) False XLOC_001190
TCONS_00001887 mRNA downstream 272570 20932052 ~ 20970266 (-) True XLOC_001185
TCONS_00001907 mRNA upstream 15417 21313165 ~ 21321482 (-) False XLOC_001192
TCONS_00001909 mRNA upstream 35320 21333068 ~ 21409877 (-) False XLOC_001193
TCONS_00001910 mRNA upstream 35378 21333126 ~ 21344478 (-) True XLOC_001193
TCONS_00001911 mRNA upstream 125262 21423010 ~ 21483832 (-) True XLOC_001194
TCONS_00001912 mRNA upstream 198102 21495850 ~ 21538673 (-) False XLOC_001195
TCONS_00001899 other downstream 229622 21011062 ~ 21013214 (-) True XLOC_001189
TCONS_00001897 other downstream 229994 21010689 ~ 21012842 (-) False XLOC_001189
TCONS_00001896 other downstream 239527 21001157 ~ 21003309 (-) True XLOC_001188
TCONS_00001894 other downstream 239899 21000784 ~ 21002937 (-) False XLOC_001188
TCONS_00001893 other downstream 249434 20991250 ~ 20993402 (-) True XLOC_001187
TCONS_00001916 other upstream 228924 21526672 ~ 21527371 (-) False XLOC_001195
TCONS_00001923 other upstream 382616 21680364 ~ 21680478 (-) True XLOC_001199
TCONS_00001929 other upstream 894204 22191952 ~ 22192067 (-) True XLOC_001205
TCONS_00001939 other upstream 1365975 22663723 ~ 22674613 (-) True XLOC_001211
TCONS_00001973 other upstream 2025254 23323002 ~ 23330066 (-) False XLOC_001223

Expression Profile

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