AMCG00015963


Basic Information

Item Value
gene id AMCG00015963
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 31855622 ~ 31873893 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015963
ATGGCTGTGTGTTCGGCGCTGTGTTCGGAGTGTGTGCTAACTCGCTGTGCTGCGCGTCTTCCCGCAGACTTTACCAAGATCCACCTCACAGACAGCCTGCACCCACAGGTGACCCACGTCTCCTCCAGCCACTCAGGATGTAGCATCACCAGTGACTCGGGGAGCAGCAGCCTGTCAGACATCTACCAGGCCACAGAGAGCGAGGCCGGGGACATGGACTTGAGCGGGCTGCCGGAGACCGCGGTGGACTCCGAGGAGGACGACGACGAGGAGGACATCGAGAGAGCCTCCGACCCGCTCATGAGCAGAGACATCGTCCGTGACTGTCTGGAGAAGGACCCCATGGACCGCACGGACGACGACATCGaacaATTGCTGGAGTTCATGCACCAGCTGCCGGCCTTCGCGAACATGACGATGTCAGTGCGCCGGGAGCTGTGTGCCGTCATGGTGTTCGCGGTGGTGGAGCGCGCCGGGACCACGGTGCTCAATGACGGAGAGGAGCTGGACTCCTGGTCGGTGATCCTGAACGGCTCGGTGGAGGTGACCTACCCCGACGGGCGTACAGAGATCCTGTGCATGGGCAACAGCTTTGGGGTCTCCCCCACCATGGACAAAGAGTACATGAAGGGAGTGATGAAGACCAAGGTGGACGACTGCCAGTTTGTGTGTATAGCCCAGCAGGACTACTGCTGCATCCTGAACCAGGTGGAGAAGAACATGCagaaggtggaggaggagggcgaGATCGTCATGGTCAAGGAGCACCGCGAGCTGGACCGCACGGGGACGCGCAAGGGCCACATCGTCATCAAGGGCACGACGGAGCGGCTGACGATGCACCTGGTGGAGGAGCACTCGGTGGTCGATCCCACCTTTATCGAGGACTTCCTGCTCACCTACAGGACCTTCCTCTCCAGCCCCATGATCGTGGGCAAGAGGCTGCTGGAGTGGTTCAACGACCCGAGCCTCAGGGATAAGGTGACGCGGGTCGTGCTGCTGTGGGTGAACAACCACTTCAACGATTTCGAGGGGGACCCCGCCATGACCCACTTCCTGGAGGAGTTTGAGAACAacctggagagagagAAAATGTGCGGCCACCTCAGACTGTTAAACATCGCCTGTGCTGCTAAGGCCAAGCTGCGCCTCGTCACGCTGACCAAGCCCTCGCGGGAGGCGCCACTGCCCTTCACCCTGCTGGGCGGCTCCGAGAAGGGCTTCCGCATCTTCATTGACAGCGTGGAGGTCGGCAGCAAGGCCTCGGAGGCGGGGCTGAAGCGCGGAGACCAGATACTGGAGGTCAATGGGCAGAACTTCGAGAACGTCCCGCTGTCGAAAGCCACCGAGATCTTGAAGAACAACACTCACCTGTCTATCACTGTGAAAACCAACTTATTAGTATTCAAGGAGCTGCTGGCCCGGCCGGCGGAGGCCAAGAAGAACGGGGCGCCGCACCTGCCCAAGATCGGAGACATCAAGAAGGCCAGCCGCTACTCCATCCCTGACCTGGCAGTGGATGTGGAGCAGGTCATGGGGCTGGACAAGGCCAGCAAGAAGGGCAAGGCCAACACAGTGGGCGGCCGCAACAAGCTGAAGAAGATCCTCGACAAGACCCGCATCAGCATCCTGCCCCAGAAGCCCTACAACGACGTGGGTATCGGCCAGTCCCAGGACGACAGCATCGTGGGGCTGCGGCAGTCCAAGCACATCCCCCCCGCCCTGCCGGTCAGCGGCACCCTCTCCTCCAGCAACCCCGACCTGCTGCAGTCGCACCACCGCATCCTGGACTTCAACAACGCGCCAGACCTGCCAGACCAGGTCCTGCGCGTCTTCAAGGCCGACCAGCAGAGCCGCTACATCATGATCAGCAAGGACACCACGGCCAAGGAGGTGGTGGTCCAGGCCATCCGCGAGTTCGCGCTGACCGCAGCGCCCGACGCCTACTCCCTGTGTGAGGTGTCCGTCACCCCCGAGGGCGTCATCAAGCAGCGCCGGCTGCCCGACCAGCTCTCCAAACTGGCCGACCGCATCCAGCTCAGCGGGAGGTACTACCTGAAGAACAATATGGAGACAGAGACGCTGTGCTCGGACGAGGATGCGCAGGACCTGCTGCGCGAGAGCCAGATCAGCCTGCTGCAGCTCAGCACGGTGGAGGTGGCCACCCAGCTGTCCATGCGCAACTTTGAGCTGTTCTGCGGCATCGAGCCCACGGAGTACATTGACGACCTGTTCAAGATCAAGTCCAAGACGGGCGCGGCCAACCTGAAGAAGTTCGAGGAGGTCATCAACCAGGAGACCTTCTGGGTGGCGTCGGAGATCGTGCGGGAGCAGAACCAGCTGAAGAGGATGAAGATCATCAAGCACTTCATCAAGATCGCGCTGCACTGCCGCGAGTGCAAGAATTTCAACTCCATGTTCGCCATCATCAGTGGGCTGAACCTGGCCCCGGTGTCGCGGCTGCGCGGGACGTGGGAGAAGCTGCCCAGCAAGTACGAGAAGCTCTTCCAGGACCTGCAGGACCTCTTCGACCCGTCCCGCAACATGGCCAAGTACCGCAACGTCCTCAACAGCCAGACCCTGCAGCCGCCCATCATCCCCCTGTTCCCGGTGATCAAGAAGGACCTCACCTTCCTCCACGAAGGCAACGACTCCAAGGTGGACGGCCTGGTCAACTTCGAGAAGCTGCGCATGATCGCCAAGGAGATCAGGCACGTGGGCCGCATGGCCTCCATCAACATGGACCCGGCGCTGATGTTCAGGACGAGGTCCCTGAGCCAGGGCAGCGCCAACGCGGCGGTGCTGGACGTGGTGCAGTCGGGGGGGCACAAGAAGCGCGTGCGCCGCAGCTCCTTCCTCAATGCCAAGAAGCTGTACGAGGACGCACAGATGGCGCGCAAGGTGAAGCAGTACCTGTCCAACCTGACGCTAGACACGAGCGAGGAGACGCTGCAGACCATCTCCCTGCAGTGCGAGCCGTCCACCAACACCCTGCCCAAGAACACGGGAGACAAGAAGGGCAGCAAGGCGGACACGTCCCCCGTGGTGCCCCGCGCCGCCGGGCAGAAGCAGCCGCAGCCACAGAAGGGCGGCCAGGCGCTCCAGGTCCCGGCCGTGTCGCTCTACCCATCTCGCAAGAGGGTCCCCGTCAAAGATCTGCCCCCCTTCGGTACGAGCTCACCTCAGGCCTTAAAGAAAATCCTGTCGCTGTCGGAGGAAGCGAGCGAGAGACACAAAAAGCCGACGGAGGACACAGTGTCCAACGCCTCGTCCCAGCTGTCCTCACCGCCCACCTCCCCCCAGAGCTCCCCCCGCAAAGGTGGCAGTCAGCTGAGAACTCGCACCTGCCGGCACTCAGAGCTGTGCGGCCCCCCCGGCCCAGCCGCCCCCCTGGGAAGTGAGAACTGTAACAGGAATAACAATGGCGCGGCGCGGACCTGTGGGATAGGTTACCCTCTGGCCCCGAGCGGCACCGTGGACAACTTCTCCGACTCGGGCCACAGCGACGTCTCCTCGCGCTCCAGCATCGTCAGCAACTCGTCCTTCGACCTGGCGCACGACGGCCGCCGGCAGCGCCACTCGGTCAGCGCCGGCGACTCCAGCCTCGGGGGTGGCAGGATGGAGCGCCGGGCCACGCTGGACCCGGACCAGTACAGCCTGGGCTCGTACGCCTCGATGCACGAGGGCCGGGCCCTGTACGCCGGTGCCACGGTGCTGTCGTCCCCGAGCTCGGAGGAGCTGACGCAGGACCACGGGGACCGCGTGTCTCTGGACGCGGCGGACAGCGGCAGAGGAAGCTGGACCTCCTGCTCCAGTGGCTCCCACGACAACATCCAGACCATCCAGCACCAGCGCAGCTGGGAGACGCTCATTCTCGGGCACCCGCACTTCGACAGCTCCTCCGCGGACGGGCCGGGCCTGTGGGCCGCCGGCTGCCCCATGGACCCCCAGCTGTACGGCGACCCCGGGGCCCGGCTGCTGCGTGCGGGGCAGGACCACGGGCAGACGCGGGGCAGCTGggcctcctccacctcctccacgGGCTACTGGGGCGAGGACTCCGAGGGAGACACCGGGACCATCAAGCGCCGGGGCGGCAAGGATGTGAGCGCGGACGCCGACGCCAGCAGCATCGCTTCCAGCGCCTCCGAGGAGTCCAAGCAGCACTCGCGGCCTGCGCACATCCCCATGCCCTCGGGCGGCGCCAAGGGGCTTATCGCCCGCAAGGAGGGCCGTTTCCGAGAGCCACCCCCAACACCCCCGGGCTACACGGCGCTGACCATCCCGGATTTCGGTGAAGAGCGTCAGTCGCACCCGGGACGCAAGCCCCCCGACTACAGCGTGGCCCTGCAGCGCTCCCGGATGGCCCGCACCTGCGACTCCCCACAGCCCCACGCGCAGGGGCCCCCCCGGCCCGCCGGCGGCCGCCCGCAGTGGCACCGGCCCCCCAACGGAGACCCCCGGCTGCACCACCTCCACGCGCAGGGGCCGGCGGCCGATGGGGAGGAGGCGGGCGGGGGGGAGGAGTTGGAGGAGGGTGAGGGTGAGTCCTTGTCTCCAAAACTTATTCCTCTGAGGAAGACGGTGGCTTTTACACCTGAGACCCCCAGACCTTGA

Function

GO: NA

KEGG:

id description
K08018 RAPGEF2, PDZGEF1; Rap guanine nucleotide exchange factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015963 True 4617 mRNA 0.65 23 31855622 31873893

Neighbor

gene id symbol gene type direction distance location
AMCG00015961 NA coding downstream 89256 31747028 ~ 31766366 (-)
AMCG00015958 fstl5 coding downstream 264814 31585936 ~ 31590808 (-)
AMCG00015957 NA coding downstream 335905 31488157 ~ 31519717 (-)
AMCG00015956 NA coding downstream 614956 31239007 ~ 31240666 (-)
AMCG00015954 msmo1 coding downstream 684305 31163968 ~ 31171317 (-)
AMCG00015971 etfdh,LOC102777291,LOC106604511,LOC107758565,LOC104941522,LOC102789087 coding upstream 114394 31988287 ~ 31993019 (-)
AMCG00015972 NA coding upstream 124230 31998123 ~ 32026975 (-)
AMCG00015970 NA coding upstream 191604 32065497 ~ 32072955 (-)
AMCG00015973 NA coding upstream 203334 32077227 ~ 32078059 (-)
AMCG00015974 NA coding upstream 204600 32078493 ~ 32081016 (-)
G101996 NA non-coding downstream 30926 31824435 ~ 31824696 (-)
G101911 NA non-coding downstream 884735 30892328 ~ 30970887 (-)
G101859 NA non-coding downstream 1095198 30754887 ~ 30760424 (-)
G101855 NA non-coding downstream 1108814 30746569 ~ 30746808 (-)
G101828 NA non-coding downstream 1515894 30336087 ~ 30339728 (-)
G102020 NA non-coding upstream 79015 31952908 ~ 31953648 (-)
G102092 NA non-coding upstream 488570 32362463 ~ 32362863 (-)
G102149 NA non-coding upstream 656378 32530271 ~ 32530594 (-)
G102234 NA non-coding upstream 790879 32664772 ~ 32681331 (-)
G102237 NA non-coding upstream 824134 32698027 ~ 32698376 (-)
AMCG00015960 NA other downstream 138292 31707378 ~ 31717330 (-)
AMCG00015962 NA other downstream 156116 31673484 ~ 31699506 (-)
G101963 NA other downstream 226056 31629248 ~ 31629566 (-)
G101939 NA other downstream 567829 31267404 ~ 31287793 (-)
AMCG00015955 klhl2,LOC107745059,LOC107548347,LOC107655955 other downstream 662197 31171439 ~ 31193425 (-)
G102017 rapgef2,LOC102783712 other upstream 34596 31908489 ~ 31945175 (-)
AMCG00015965 NA other upstream 80753 31954646 ~ 31970287 (-)
AMCG00015979 NA other upstream 513020 32386913 ~ 32390012 (-)
AMCG00015984 gucy1b3,gucy1a3,LOC107572203 other upstream 549235 32423128 ~ 32446965 (-)
AMCG00015985 gucy1a3 other upstream 575607 32449500 ~ 32456878 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000014_00466896_00506088 RAPGEF6 coding CI01000014 null 466212 ~ 506088 (-)