AMCG00015971 (etfdh,LOC102777291,LOC106604511,LOC107758565,LOC104941522,LOC102789087)


Basic Information

Item Value
gene id AMCG00015971
gene name etfdh,LOC102777291,LOC106604511,LOC107758565,LOC104941522,LOC102789087
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 31988287 ~ 31993019 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015971
ATGGTGTGTGAAGCTCCTCCTGTACTGACACCCTGccagctctgctctgctcaTCTCGCCGATCAGGAAGGAAACCGGAGACCGTCCTGCCACCCGATAGCGCCTGGCCCGTTCGAGCCGCAGTGCGTTCGGTCCCTGAGGGTCCTGCAGAGGGAGCGCCTGTCCTCCCTGCTCCCGGCGCAGAGATGCTCGTCCTCGGCGCCGCGCATCACCACCCACTACACGCTGGCGGAGCAGCAGGGCCGGGAGCTGAGGGTGTGTGTGGTGGAGAAGGCCTCCCAGATCGGGGCGCACACGCTGTTCGGCATTCTGACGGAGAAGCACCGGATCCCTGTCCCCATGCTGCCAGTGAGCGTGCTGGTGTCTAATCGAGTCCTTGTGCCCCCAGGTCTGCCCATGAACAACCACGGCAACTACATTGTGCGCCTGGGCCACGTGGTCCGGTGGCTGGGGGAGCAGGCCGAGGCCCTGGGCGTGGAGCTGTACCCCGGCTACGCTGCGGCGGAGGTGCTGTTTCACGAGGATGGGAGTGTGAAGGGCATCGCCACCAATGACGTGGGCATCGCCAAGGACGGCTCCCCGAAGGACACCTTTGAAAGGGGGATGGAGCTCCATGCCAAGGTCACCATCTTTGGGGAGGGCTGCCACGGACACCTGGCGAAGCAGCTGTACAGACGCTTCAACCTGCGGGAGGAGTGTGAGCCTCAGACCTACGCCATCGGGCTGAAAGagCTGTGGGTCATCGAGGAGAAGAACTGGAAGCCGGGCCGGATCGAGCACACGGTGGGCTGGCCGCTGGACAGACACACCTACGGAGGGTCCTTCCTGTACCACCTCAACGAGGGGGAGCCGCTGGTGGCCCTGGGCTTCGTGGTCGGGCTGGACTACCAGAACCCCTACATCAACCCCTTCCGGGAGTTCCAGCGCTGGAAGCACCACCCGTCCGTCGCCCCGAGTCTGGCCGGGGGCAGCAGGATCGCGTATGGAGCCCGGGCTCTGAACGAGGGCGGCTTCCAGAGTCTGCCTAGGCTGACGTTCCCAGGGGGGCTGCTGATCGGCTGCAGCCCCGGCTTCATGAACGTGCCGAAGATCAAGGGAACGCACACAGCCATGAAGAGCGGCATGCTGGCGGCCGAGGCGGTCTTCCACAAGCTCACCGATGAGAACCTGGCGTCTCCCACTGCAGGAGTCCACGTGCCGGAGTACGAGGTCAGCCTGAGGGCGTCCTCCGTGTGGAAGGAGCTGCACAGCGTCAGGAACATCCGGCCGTCCTTCCACAACCCCCTGGGGCTGTACGGAGGCATGATCTACACCGGCATCTTCTACTGGATCTTCAGGGGGAAGGAGCCGTGGACCCTAAAACACCAGGGTCTGGACGCCACGCAGTTGAAGCCGGCCAAGGACTGCACCCCCATCGAGTACCCCCGCCCCGACGGCAAGATCAGCTTCGACCTGCTGTCCTCCGTGGCGCTCAGTGGGACCAACCACGAGCACGACCAGCCGGCCCACCTCACCCTGCTGGATGACCGCGTCCCGGTGGAGAGGAACCTGGCCGTGTACGACGGGCCGGAGCAGCGCTTCTGTCCCGCAGGCGTGTACGAGTACGTGCCCCTGGAGTCGGGCGACGGGATGAGGCTGCAGATCAACGCCCAGAACTGTGTCCACTGCAAGACCTGCGACATCAAGGACCCCAGCCAGAACATCAACTGGGTGGTCCCCGAGGGCAGTGGGGGGCCGGCGTACAACGGCCTGTAG

Function

symbol description
etfdh Predicted to enable electron-transferring-flavoprotein dehydrogenase activity. Acts upstream of or within respiratory electron transport chain. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Used to study multiple acyl-CoA dehydrogenase deficiency. Human ortholog(s) of this gene implicated in multiple acyl-CoA dehydrogenase deficiency. Orthologous to human ETFDH (electron transfer flavoprotein dehydrogenase).

NR:

description
PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial

GO:

id name namespace
GO:0022904 respiratory electron transport chain biological_process

KEGG:

id description
K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015971 True 1755 mRNA 0.65 13 31988287 31993019

Neighbor

gene id symbol gene type direction distance location
AMCG00015963 NA coding downstream 114394 31855622 ~ 31873893 (-)
AMCG00015961 NA coding downstream 221921 31747028 ~ 31766366 (-)
AMCG00015958 fstl5 coding downstream 397479 31585936 ~ 31590808 (-)
AMCG00015957 NA coding downstream 468570 31488157 ~ 31519717 (-)
AMCG00015956 NA coding downstream 747621 31239007 ~ 31240666 (-)
AMCG00015972 NA coding upstream 5104 31998123 ~ 32026975 (-)
AMCG00015970 NA coding upstream 72478 32065497 ~ 32072955 (-)
AMCG00015973 NA coding upstream 84208 32077227 ~ 32078059 (-)
AMCG00015974 NA coding upstream 85474 32078493 ~ 32081016 (-)
AMCG00015976 gria2,LOC106604527 coding upstream 171175 32164194 ~ 32208315 (-)
G102020 NA non-coding downstream 34639 31952908 ~ 31953648 (-)
G101996 NA non-coding downstream 163591 31824435 ~ 31824696 (-)
G101911 NA non-coding downstream 1017400 30892328 ~ 30970887 (-)
G101859 NA non-coding downstream 1227863 30754887 ~ 30760424 (-)
G101855 NA non-coding downstream 1241479 30746569 ~ 30746808 (-)
G102092 NA non-coding upstream 369444 32362463 ~ 32362863 (-)
G102149 NA non-coding upstream 537252 32530271 ~ 32530594 (-)
G102234 NA non-coding upstream 671753 32664772 ~ 32681331 (-)
G102237 NA non-coding upstream 705008 32698027 ~ 32698376 (-)
G102261 NA non-coding upstream 803086 32796105 ~ 32796333 (-)
AMCG00015965 NA other downstream 18000 31954646 ~ 31970287 (-)
G102017 rapgef2,LOC102783712 other downstream 43112 31908489 ~ 31945175 (-)
AMCG00015960 NA other downstream 270957 31707378 ~ 31717330 (-)
AMCG00015962 NA other downstream 288781 31673484 ~ 31699506 (-)
G101963 NA other downstream 358721 31629248 ~ 31629566 (-)
AMCG00015979 NA other upstream 393894 32386913 ~ 32390012 (-)
AMCG00015984 gucy1b3,gucy1a3,LOC107572203 other upstream 430109 32423128 ~ 32446965 (-)
AMCG00015985 gucy1a3 other upstream 456481 32449500 ~ 32456878 (-)
AMCG00016006 NA other upstream 916157 32909176 ~ 32938058 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_04576065_04586515 ETFDH coding CI01000000 null 4576065 ~ 4586881 (+)