AMCG00016058


Basic Information

Item Value
gene id AMCG00016058
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 4376445 ~ 4378160 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016058
ATGGCATCTTCTCTTCATCCCTGGATTCAACCACCTTctcatctctttctctcctctctgtgtttTCAGAACTCCATCAGACACAACCTTTCCCTGCATAGCCGCTTTGTGCGTGTGCAGAATGAGGGCACCGGGAAGAGCTCATGGTGGATGCTAAACCCAGAGGGGGGTAAGAGCGGCAAGTCCCCCCGGCGCAGGGCCGCGTCTATGGACAACAACAGCAAGTTTGCCAAGAGCCGCGGTCGCGCAGCCAAGAAAAAAATGGCTCATCAGAGTGGGCAGGACGGCAGTGCGGACAGTCCTGGTTCCCAGTACTCCAAGTGGCCCGGCAGCCCCAGCTCCCACAGCAACGATGATTTTGATGCCTGGACGACCTTCCGCCCACGCACCAGTTCCAATGCCAGTACCGTCAGCGGTCGCCTCTCCCCCTTCATGCCTGAGCAGGACGACCTGAGCGAGCCTGATGTGCACCTGGTCTACTCCAGTGCCTCCAGCAAAATGACAGCAACCTTGCCCAGCCTCTCAGAGATGACAGGCTCCATCAGCCACCACAGCTCTGAGAACGTCATGGAGAATCTTCTGGACAACCTCAATCTTCTCTCCCCTAAGAACCCCCAGGTGGTGGCCAGCAGCCCATCCCaatcctctccctcctccatgATGCAGCCCAGCCCAGGTTACCCTTCATACAGCTCCCCCAGTGCCGCCACCTTGGGCTCCCAGTCCCAGCAGGACTACCGCAAGTGCCTGTATGGACAGGGCGGGATGAACTCCCTGTCCCCCATGCCTATGCAAACCCTGCCAGAAAGCAAGCCAGGTTTTGGGTCGTCAATGACCCAGTATGGCTGCCCCACGGGACTCCTCAAAGAGCTCCTCACCTCGGACTCAGACCCTCATGCAGAAATCATGCCCTCGGTGGACACTGTGGTGTCACAATCCAGCGCCAGGGTTCCCAATGTCATGATGCCCGCCAGCTCGGTGATGCCCACCAACTCGGTGTTGTCCTCCTATAGTGGTGGGCAGATCAGCCATGGGAAGTTAATGAGCCCCAGCAGTggccacacgcacacacacccacatgcAGTGCACTGCCAGACCACGGCTTCTATCAATGGTCGTGTGTTGCCCCACCCGATGACCTCAATGAACCACAGTGCGGGCCTCAGCCGCCTCTCCACCGTAAGGACTCCCCAAGTGCCTCTGGGCCACCCCCTGCACATGAACACCCTGCCCCCTTACTGCGCGGTCAACAGCAGTAATGGTTACAGCCGCATGGGCCACCCCACTGCCCACCACGAGAAACTGCCCAGCGACCTGGATGACATGTCCATTGAGCGCTTCGAGTGTGACATGGAGTCTATCCTCCACGACACACTGATGGATGGAGACTCATTGGACTTTAACTTTGACCCCATGGTGACCACGCAGGGCTTTCCCCACAGCGTGAAGACCACCACACACAGCTGGGTGTCAGGGTAA

Function

GO: NA

KEGG:

id description
K07201 FOXO1; forkhead box protein O1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016058 True 1479 mRNA 0.58 2 4376445 4378160

Neighbor

gene id symbol gene type direction distance location
AMCG00016053 lhfp,LOC105029023,LOC107670626,LOC107740377,LOC107593461 coding downstream 270714 4104731 ~ 4105731 (-)
AMCG00016048 NA coding downstream 429010 3928734 ~ 3947435 (-)
AMCG00016050 NA coding downstream 541090 3823251 ~ 3835355 (-)
AMCG00016045 NA coding downstream 591949 3783534 ~ 3784496 (-)
AMCG00016047 NA coding downstream 707887 3622918 ~ 3668558 (-)
AMCG00016059 foxo1 coding upstream 46828 4424988 ~ 4427749 (-)
AMCG00016063 NA coding upstream 65256 4443416 ~ 4451855 (-)
AMCG00016064 LOC105011210,LOC107718790 coding upstream 98179 4476339 ~ 4490665 (-)
AMCG00016062 NA coding upstream 129303 4507463 ~ 4517486 (-)
AMCG00016065 vps36,LOC107701118 coding upstream 140410 4518570 ~ 4532263 (-)
G10740 NA non-coding downstream 2724 4371465 ~ 4373721 (-)
G10735 NA non-coding downstream 21149 4354853 ~ 4355296 (-)
G10715 NA non-coding downstream 206107 4166778 ~ 4170338 (-)
G10698 NA non-coding downstream 388490 3987653 ~ 3987955 (-)
G10696 NA non-coding downstream 397328 3977559 ~ 3979117 (-)
G10805 NA non-coding upstream 208563 4586723 ~ 4587875 (-)
G10806 NA non-coding upstream 213660 4591820 ~ 4592077 (-)
G10812 NA non-coding upstream 244571 4622731 ~ 4623216 (-)
G10821 NA non-coding upstream 260290 4638450 ~ 4638659 (-)
G10823 NA non-coding upstream 261629 4639789 ~ 4641030 (-)
AMCG00016049 NA other downstream 455942 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 833909 3528842 ~ 3542536 (-)
G10478 NA other downstream 1341262 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 1530088 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 1665760 2710399 ~ 2710685 (-)
AMCG00016074 NA other upstream 525696 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 3302751 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 3741061 8119221 ~ 8124033 (-)
G11326 NA other upstream 3813386 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 4445385 8823545 ~ 8827760 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008257 foxo1a coding NC_007126.7 CM002899.2 3284416 ~ 3379041 (+)
grasscarp (Ctenopharyngodon idella) CI01000320_02336309_02366406 FOXO6 coding CI01000320 null 2335946 ~ 2366815 (+)