Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000320_02336309_02366406 |
| gene name | FOXO6 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000320 |
| NCBI id | null |
| chromosome length | 3894707 |
| location | 2335946 ~ 2366815 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| foxo6 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of dendritic spine development and regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be part of chromatin. Predicted to be active in nucleus. |
| id | name | namespace |
|---|---|---|
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| K17847 | FOXO6; forkhead box protein O6 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000320_02336309_02366406.mRNA | True | 3607 | mRNA | 0.52 | 8 | 2335946 | 2366815 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000320_02299325_02304327 | PPP1R8, PPP1R8A | coding | upstream | 29976 | 2299325 ~ 2305970 (+) |
| CI01000320_02282070_02289729 | PDIK1L | coding | upstream | 45870 | 2282070 ~ 2290076 (+) |
| CI01000320_02255851_02273023 | LIN28A | coding | upstream | 62773 | 2255726 ~ 2273173 (+) |
| CI01000320_02241842_02244008 | NA | coding | upstream | 91813 | 2241842 ~ 2244133 (+) |
| CI01000320_01971920_01972919 | OPRD1B, OPRD1, OPRD1A | coding | upstream | 362796 | 1971920 ~ 1973150 (+) |
| CI01000320_02423883_02469614 | NA | coding | downstream | 56664 | 2423479 ~ 2469798 (+) |
| CI01000320_02475940_02478139 | NA | coding | downstream | 108698 | 2475513 ~ 2478156 (+) |
| CI01000320_02484846_02485382 | NA | coding | downstream | 117943 | 2484758 ~ 2485382 (+) |
| CI01000320_02611783_02619571 | CTPS1A, CTPS, CTPS1B, CTPS1 | coding | downstream | 244968 | 2611783 ~ 2619694 (+) |
| CI01000320_02625602_02629500 | RAB42A, RB39B, RAB42 | coding | downstream | 258489 | 2625304 ~ 2631561 (+) |
| G455173 | NA | non-coding | upstream | 15606 | 2320098 ~ 2320340 (+) |
| G455165 | NA | non-coding | upstream | 25660 | 2310051 ~ 2310286 (+) |
| G455159 | NA | non-coding | upstream | 66850 | 2268649 ~ 2269096 (+) |
| G455110 | NA | non-coding | upstream | 111193 | 2205513 ~ 2224753 (+) |
| G455082 | NA | non-coding | upstream | 151199 | 2151221 ~ 2184747 (+) |
| G455181 | NA | non-coding | downstream | 5472 | 2372287 ~ 2372507 (+) |
| G455184 | NA | non-coding | downstream | 7523 | 2374338 ~ 2374679 (+) |
| G455195 | NA | non-coding | downstream | 25548 | 2392363 ~ 2392610 (+) |
| G455201 | NA | non-coding | downstream | 48323 | 2415138 ~ 2415368 (+) |
| G455204 | NA | non-coding | downstream | 69568 | 2436383 ~ 2436602 (+) |
| G455129 | NA | other | upstream | 138938 | 2190317 ~ 2197008 (+) |
| G454251 | NA | other | upstream | 1120914 | 1214578 ~ 1215032 (+) |
| G455393 | NA | other | downstream | 733009 | 3099824 ~ 3100289 (+) |
| CI01000320_03117532_03169741 | NA | other | downstream | 750732 | 3115820 ~ 3169749 (+) |
| G455404 | NA | other | downstream | 754001 | 3120816 ~ 3121105 (+) |
| G455418 | NA | other | downstream | 790230 | 3157045 ~ 3157648 (+) |
| CI01000320_03327551_03328396 | NA | other | downstream | 960386 | 3327201 ~ 3328396 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_013960 | foxo6b | coding | NC_007130.7 | CM002903.2 | 15571290 ~ 15620967 (+) |
| bowfin (Amia calva) | AMCG00016058 | NA | coding | CM030122.1 | CM030122.1 | 4376445 ~ 4378160 (-) |
